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Query: 5Z0M Entity 1(prereleased), from PDB1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTVRKNQATLTADEKRRFVAAVLELKRSGRYDEFVRTHNEFIMSDTDSGERTGHRSPSFLPWFRRFLLDFEQALQSVDSSVTLPYWDWSADRTVRASLWAPDFLGGTGRSTDGRVMDGPFAASTGNWPINVRVDSRTYLRRSLGGSVAELPTRAEVESVLAISAYDLPPYNSASEGFRNHLEGWRGVNLHNRVHVWVGGQMATGVSPNDPVFWLHHAYVDKLWAEWQRRHPDSAYVPTGGTPDVVDLNETMKPWNTVRPADLLDHTAYYTFDALELast
1 -72.800PF00264.20; A2QUC2_ASPNC/107-337; Common central domain of tyrosinase  ali follow..  28  1...........................KTRYDEFVATHINL--------TEHIHVTADFLAWHRFFIHAFENALRVCNYTGTLPYWEWGLDAENPSVLFNGDLYSMGTNGGGGCVYGGPFSNYTVHMGPIDAEYNPRCLSRDVNPSVSRMSNSFRNTTKLILSYDTIDWFQGVMQADQRDPTAPFSYGVHGGGHLTVGSVLAIDTSPAEPMFWLHHAQIDRVWTIWQG............................................... 230
2 -11.300PF00372.19; E2BPJ6_HARSA/157-426; Hemocyanin, copper containing domain  ali follow..  9  52.......PNLYEEYKMDYFMEDHSLNA---FYYYVRQVFPFWLDMKECDIPQNFRGQFYYFQHKQLYARYERVSNDFGCVEDFDWNKHFYPGYYSTLMYN----------NGMQLPQRPRYSNIPFYKYKYLKEVETLEMRIMNAIDLGYVYDKTGKQVNIYTPEGLNILANIIEGNVDSCNRRFYGMYDALARDILGFNFDHSTSMRDPGFYRLYKRIMSYF.................................................... 270
3 -6.600PF02383.18; E9HJ60_DAPPU/49-412; SacI homology domain  ali follow..  9  114.RIGIDGREGDRGARKIWDEMEKMFTHADSF-DLTNSIPVLGESYNSTNVSWRSANSRFF-WNKYLLKELIDLGDPKADPWIIP------------------------------ILHGYIHIDTVPVVLDGVTNFNKLISRRSRNRAGTRYKRRGVD-------------ENGYVANYVETEQCLLFGDHILSFVQVRGSV--------PVFWSQPGF------KYRPPPQIDRGVEDTRVAFQRHFERELPIYENLCVVSLVEQN......... 330
4 -6.290PF16545.5; M4A4G7_XIPMA/423-522; Cerebral cavernous malformation protein, harmonin-homology  ali follow..  16  17..MITLRNKLNPLELQQFAVLLREYRLGSNIDHFCSELLQLYGDKRKFLLLGMR---PFIP--DKDVGVFEEFLESIG..................................................................................................................................................................................................... 87
5 -5.630PF18221.1; Q2M051_DROPS/5-98; Mutator 2 Fork head associated domain  ali follow..  15  20....................................................................................................................................................................................................IGRNEAYEFCVADESMELFHAMAIV---------YRAGVLRVNALMGKVFVNGLENGNVDISRKDAIDGKVKLRFGNVA 89
6 -5.560PF10347.9; A5E563_LODEL/1337-1489; RNA pol II promoter Fmp27 protein domain  ali follow..  18  26LVISENMVTAPENLRKITVPLVSVDENELN----VKMYTNLRCTFNSDYPTRIVWGTSYQFGIQQFMLNFDQFSKPVDPSPKLGFWD............................................................................................................................................................................................ 122
7 -5.530PF07173.12; J3N9M9_ORYBR/94-237; Glycine-rich domain-containing protein-like  ali follow..  9  73.AVKRQSSFFYQVDTPTMHDRRFLEEALARYKGFLYL---KTNQENKMKLFRVPTYDVDVMWHTHQLH-------------PATYCH............................................................................................................................................................................................ 143
8 -5.470PF17074.5; DARCH_GRABC/1-124; Darcynin, domain of unknown function  ali follow..  7  22VKTSPEWLGFPVERRFALLEE--------QFTPILRKHAAHVTLRFFDVEFYATRVTDLWMWDARDHHSYQLLVEDLRETAFWDRY............................................................................................................................................................................................. 99
9 -5.460PF18424.1; G3NDT0_GASAC/198-320; Alpha-Dystroglycan N-terminal domain 2  ali follow..  6  12VILDADLTKMGAEQRVNLLAVMRKFSHVPL--VNNRLFDMSAFMAGPGNAKKVVENGALVSWSIPDIDSVQSSAKNMSARLGYPAVGWHIVNKKP.................................................................................................................................................................................... 123
10 -5.260PF06382.11; Q9V3S3_DROME/1-146; Protamine and protamine like  ali follow..  24  108.KAAKAWARLSENRKDRYRRMACKVTTSER..................................................................................................................................................................................................................................................... 136
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.