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Query: 5mmi_V mol:protein length:192 plastid ribosomal protein uL24c, from PDB1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAAMAALQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRKVRYLIKTGEIVDTPDRWKEIQNKKESETAVAVAALast
1 -25.000PF17136.4; B0VI20_CLOAI/43-106; Ribosomal proteins 50S L24/mitochondrial 39S L24  ali follow..  32  1........................................................................................................VHMIKKHAKPTQQNPQGGIITMEAPIDASNVMLFNEKLNAVSKPVYQV-REGRRIRVCKKSGDEL....................... 64
2 -16.000PF16906.5; U5D8M2_AMBTC/8-121; Ribosomal proteins L26 eukaryotic, L24P archaeal  ali follow..  18  28.......................................................SPELRNKYNVRSVPVRKDDEVQVVRGTFKGREGKIVLVYRIKWVIHIERITREKVN------------STVNVGIHPSKVMVTKLKLDKDRK............................................. 108
3 -14.900PF00467.29; RL24_STRCO/5-36; KOW motif  ali follow..  34  1.......................................................................KGDLVQVITGKDKGKQGKVIAAFPREDRVLVE......................................................................................... 32
4 -7.180PF18346.1; A0A0K9NVF3_ZOSMR/896-1014; Mind bomb SH3 repeat domain  ali follow..  17  61....................................................................PLNRGQHVQLKSGQSRDSIGTVLCVDDD-GILRVG......................................................................................... 104
5 -7.030PF14505.6; Q3AU32_CHLCH/27-287; Domain of unknown function (DUF4438 topsan)  ali follow..  13  64........................................................................GNSATVATGDAKGAEGTVIGHHGGSEHVIVDFPRDVKEKLLYSDTLIIRGVGQGLRLLEYPDIALFNLSPRLLHAMKVREMGNG---MLEVPVTTIVP...................... 158
6 -6.430PF14592.6; T2KLV7_9FLAO/30-455; Chondroitinase B  ali follow..  11  13....................................................................AAKPGDHLVMANGKGVGTEAQPIVLEAETGKVFIEG---------------QSRLRLSGEYLEVSGLYFRNGFTPKSTIIDFRTDNESVANHSKITNCVI........................ 107
7 -6.000PF02789.17; AMPA_NOSS1/19-145; Cytosol aminopeptidase family, N-terminal domain  ali follow..  10  29............................................................................LITEEEFTGKANSTVFTRVSSNKIILVGLGKTEAFKIETLRRAAAAVGKVGKKQKSKVIGLSFPLWNNDPTASAQAIAEG.................................... 112
8 -5.980PF01148.20; Q9I0U8_PSEAE/42-308; Cytidylyltransferase family  ali follow..  11  149.....................................................................VQLSDVMQYICGKLFGKRKIAPNLSPSKT---VEGF----------LATAIGASLWWITPFNLWQAALIALLINLLGFFGGLVMSAIKRDRGVKDWGHMIE...................... 241
9 -5.840PF16697.5; E3FMY4_STIAD/31-122; Inner membrane component of T3SS, cytoplasmic domain  ali follow..  13  1............................................................................LVLSGPEAGSSHALTR--APTCDIVLSDKTISRQHLK---------LEVRDEHVLAIDLDSRNGSFCEGLRFSQVELRPGSAITL............................... 81
10 -5.830PF02699.15; D5MIU9_9BACT/21-99; Preprotein translocase subunit  ali follow..  22  19.....................................................RPQQKKQKEQKDMLANLKTGDQIITTGG-----YGTIVKFGEDNRVKVRIAENVTVEIARSA............................................................................. 76
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.