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Query: 5x41_Q mol:protein length:256 Uncharacterized protein CbiQ, from PDB1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSGSMSIASIDRVAAQGHWRSRPLAEKSLIGLGFLALAVTVPPFPGAVLVTVAILAFTFLGARVPLRFWASVAVLPLGFLTTGAAVLLIQIGPEGIGLAPDGPAKAAALVMRATAATCCLLFLATTTPAADLLSGLRRWRVPAELIEIALLTYRFVFILAEEAAAMTTAQRARLGHATRRRWLRSTAQVIAALLPRALTRARRLETGLGARNWQGEMRVLSTRPPASARVLGLILTLQAAILAAGVLLLast
1 -70.800PF02361.16; O27740_METTH/13-230; Cobalt transport protein  ali follow..  20  1.................KESSIHRLDGRIKLIITFIIIAFAVSASSVVTLILMEAYLLLLVLLSNVSPSYALKRIILILPFGGFIALFQPFITGPLGMDVTLEGLIFGALLLGKVTVSVTAVILLSSTTSMQELVGSARRIGVPSDFAMLLNLTVRYLFFFYDELERIRNAQKTRCKRTSYRWRLRKVGETIAMMFLRAYEQGERVYLSMLSRGYSQDSQMYT........................... 218
2 -7.940PF18424.1; G3NDT0_GASAC/198-320; Alpha-Dystroglycan N-terminal domain 2  ali follow..  7.......................................................................................................................VTVLTVILDADLTKM-GAEQRVNLLAVMRKFSHVPLEHMRVVPVVNNRLFDMSAFMAGPGNAKKVVENGALVSWKLGCGLDQGSIPDIDSVQSSAKNGTMSAR............................ 108
3 -7.460PF04177.12; E4ZRV9_LEPMJ/12-366; TAP42-like family  ali follow..  12  23.....................................................................................................QENLTMTIATYEECLKLAEQVSLFSPNETLEDISSELQYMAINHHLAELVQKISS------DISIRKQNLLRARTYYEKFLKLLDSYDLL-ANTRDPAARREAKISRFREEKELKRKIEVCCATTASVRR................... 167
4 -6.820PF02291.15; A5E2M9_LODEL/42-174; Transcription initiation factor IID, 31kD subunit  ali follow..  10  3.............................................................................................................................IVPRDVRLLHLIFATQGIDHVPLQLMDFAHRYTRGVLKDALVY--NEHAKPAGASSSSSAANSTTV----------NTDDIRLAIAAR..................................... 82
5 -6.800PF09756.9; DDRGK_DROPS/109-296; DDRGK domain  ali follow..  14  82.................................................................................................FSVEEEGLADFIQYIKDNKVVLLEDLAVAFKLKTQQAIERIQDLQANGTLTGVIDDRGKFIYVSEEELAAVAKFIKQRG-----RVSIVELAESSNNLI...................................................... 187
6 -6.430PF16214.5; A0A1D5P0J0_CHICK/1-415; Adenylyl cyclase N-terminal extracellular and transmembrane region  ali follow..  178......FQSEKLERLYQRYFFRLNQSSLTMLMAVLVLVCVVMLI--VLSLAILLMVVLCMVCNRNDFHQDHMWLACYSVILVILAVQVVGVLLVWPRSASEGIWWTVFFIYSIYTLLPVAAVISGVVLSAIHLAVSLKINAEDKFLLKQLVSNVLIFSCTIVGVCTHYPAEVSQRQAFQETRECIQA--RLLLSVLPRHV--AMEMKADINAKQEDMMFH.............................. 415
7 -6.280PF09323.10; Q5M538_STRT2/1-178; Domain of unknown function (DUF1980 topsan)  ali follow..  1...............................................................................................................MLRFLILSGYFELVMYLQVSGKLNQYIN----IHYSYLAYISMALSFILALVQLIVWMKKIKVHSHLSGRVAKGTSIVLLAFPVLTGLLVPTVTLDANTVSKGYH.................................. 102
8 -6.230PF05477.11; F1NVI5_CHICK/9-256; Surfeit locus protein 2 (SURF2)  ali follow..  2.................................................................................................................EEVRLFLRQHPLLSLAESGKVRCRLTGHELPCRLAELQAYT-KYRRLIKTSR-----EFDYGTFEPHIVPSTKNIHQLFCKLTLRHINKLEHVLRHVQGKRYQKALKTYEKCQKEGVK................... 117
9 -6.230PF15710.5; CS057_HUMAN/1-668; Domain of unknown function (DUF4671 topsan)  ali follow..  15  604..............................................................................................................................ATNVVRGLIVELSNLN------RLIMGTHRDL----EAFKRLNYRKTKLGGKAPLPYPSKGPG---------NIPRGDPPWREL........................................ 668
10 -6.170PF13779.6; D7A9C0_STAND/55-942; Domain of unknown function (DUF4175 topsan)  ali follow..  16  3..................................................................................VWPALAAAGAAVGLFLIASWLGLWLALPPYGRVIGVVIFAALFVL------ALIPALRIRSPSSLDRESRMPHRPATALADHAAALWRAHISRMSGQRKALRALVMLGVIATFFMVPGDHVRRIAAAFDWQGYTARPPVM............................ 185

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24