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Query: 6eu0_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7, from PDB1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYINFGKTVKDGPFYTGSMSLIIDQQENSKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFPNELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEAAFLast
1 -68.300PF11705.8; R4X7B3_TAPDE/10-212; DNA-directed RNA polymerase III subunit Rpc31  ali follow..  19  1...RGGGPRMGGPMANNMPQLAELQASIQDSPQKLYPEFVIPEAKHPTQDEKLQIKFFKEQTSIINETPFYVQIREKVTG-------------------TTGDGIERYSDRWRPKQKVAQSLVDLRTDEKYFPEELLPVLHGDIVGRKKRKQQTFDLSKFL---------------DMNTEADVDAAETSSALGDAPGEPGDKGSDEDGEAEEDPDDAFSDDGNDYEDNYFSGGEN............... 203
2 -16.600PF10446.9; K1X719_MARBU/320-790; Protein of unknown function (DUF2457 topsan)  ali follow..  20  45.........................................................................................................................................................................TEAEEEALEEEEEEEEEEDLEDIDEGDASGSDDENDDDDDGDEDDDQETTYDSDEDASDGN-DNEAGFADSDESDAEGEFSF 127
3 -13.500PF06524.12; B7QNY2_IXOSC/1-301; NOA36 protein  ali follow..  21  236...............................................................................................................................................................................GRQAMSSGRDDDEDDGYDYGGAGYYGSGGGGGDLDDEDEDDDEDDDDDDDDEDEESDEDESSDEKE.......... 301
4 -13.500PF04931.13; K2SXE2_MACPH/89-879; DNA polymerase phi  ali follow..  20  618....................................................................................................................................AEGLHSMIDILSKKESMSGQQDLFDQQGSEDGEDASEDDEDEQDSDVEMVEADGSDVEEVEEASDVDEEEEEDEDEEGGEDGSDADDEELEKFNAA---GEGEDSDDDDEADMDDDQMM 744
5 -12.300PF12619.8; G8Y0S6_PICSO/43-190; Mini-chromosome maintenance protein 2  ali follow..  21  1................................................................................................................................................................................................EDDETEIHNDVADLNPSDEEEGEDLMENMEDDYRINAAQDHYDLGDGNIDDEEYEE... 56
6 -11.400PF06213.12; A8IMY9_AZOC5/15-286; Cobalamin biosynthesis protein CobT  ali follow..  16  199............................................................................................................................................................................TSLEMGEDRGLENEDDNESDEESSGNQEQGDEDAQRSEDDTQDGATEVEAEMSQEELPDSASESEAGPPAEMPD..... 272
7 -11.300PF03247.14; H3AKK6_LATCH/2-103; Prothymosin/parathymosin family  ali follow..  11  21...............................................................................................................................................................................SGKEKSEPGAETTDVNGEEEENGAEADEETPEKLNDEDEGDEEDEEEVDDEEEEDEEDEEEGQAVKRRADDD.... 92
8 -10.800PF03985.13; E5S835_TRISP/35-447; Paf1  ali follow..  10  297..................................................................................................................................YNELETRVRLNRRRVKDGHVHSAVPNSRLIVRYRDFNDQELAALSARSMIVNPIEEEDDDDDEEAEAEKHVDDTAGEKKLDTDQSNQPPAKDNNNQWSDNEVKSDEGSPVVEEETEE.... 413
9 -10.200PF05764.13; N1QID7_SPHMS/24-277; YL1 nuclear protein  ali follow..  16  16...........................................................................................................................................................................................QPNLDDDALRNELLEDEEGDEGEFEGSDKDTDDALSS------SDDDEDAGPPQEGDKEDLA.. 71
10 -10.100PF08574.10; Q75B63_ASHGO/119-188; Transcription factor Iwr1  ali follow..  21  32...................................................................................................................................................................................................EDNGALVPEQDASADTQQLSDDEDSNEEDYYRNDYPED.................. 69
11 -9.270PF05477.11; F1NVI5_CHICK/9-256; Surfeit locus protein 2 (SURF2)  ali follow..  10  36......................................................................................................AELQAYGRKYRRLIKTSREFDYGTFEPHIVPSTINKLPEHVLRHVQGKRYQKALKTYEKCQKEGVKYVPACLRQKQQRRQHADDQMDGSRQPHRTEEFWEPNSPRTDEDEDGEETDDSMSDLYPPGLFPEKSPAAPQNTEANDGFA... 197
12 -9.130PF07133.11; Q8IJ54_PLAF7/184-370; Merozoite surface protein (SPAM)  ali follow..  13  32........................................................................................................................................................................DRNNIPDENEQVIEDPQEDNKDEDEDEETETENLETEDDNNEEIEENEEDDIDEESVEEKEEEEEKKEEEEKKEEKKEE.... 110
13 -9.070PF05285.12; N4VPN5_COLOR/422-738; SDA1  ali follow..  10  7......................................................................................................QDLVQYR-KSKDKGVMMAAKGLLSLYREVGAELL-----MKKDRGKDASMGLRSGEVKQRKFGEEQVGGIEGIELLAKWKEEQRKLRREAKGLPAEGSDKDDDEDDGFNSDDWDVESVGSSDSGGWINVDHSSDEEEDEPAPKKR.... 145
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.