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Query: 3lhl_A mol:protein length:287 Putative agmatinase, from PDB1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSLNYEESNLIVFGVGFDGTTSNRPGARFASSSMRKEFYGLETYSPFLDLDLEDYNICDYGDLEISVGSTEQVLKEIYQETYKIVRDSKVPFMIGGEHLVTLPAFKAVHEKYNDIYVIHFDAHTDLREEYNNSKNSHATVIKRIWDIVGDNKIFQFGIRSGTKEEFKFATEEKHTYMEIGGIDTFENIVNMLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIKNSNINIVGCDIVELSPDYDTTGVSTVIACKILRELCLIISDKIKEGLast
1 -107.000d3lhla_ c.42.1.0 (A:) automated matches {Clostridium difficile [TaxId: 272563]}  ali model 3D-neighbors follow..  100  1...NYEESNLIVFGVGFDGTTSNRPGARFASSSMRKEFYGLETYSPFLDLDLEDYNICDYGDLEISVGSTEQVLKEIYQETYKIVRDSKVPFMIGGEHLVTLPAFKAVHEKYNDIYVIHFDAHTDLREEYNNSKNSHATVIKRIWDIVGDNKIFQFGIRSGTKEEFKFATEEKHTYMEIGGIDTFENIVNMLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIKNSNINIVGCDIVELSPDYDTTGVSTVIACKILRELCLIISDKIK.. 276
2 -92.600d1gq6a_ c.42.1.1 (A:) Proclavaminate amidino hydrolase {Streptomyces clavuligerus [TaxId: 1901]}  ali model 3D-neighbors follow..  26  16.DPQPRGYDVVVIGAPYDGGTSYRPGARFGPQAIRSESGLIHGVGIDRGPGTFDINCVDAGDINLTPFDMNIAIDTAQSHLSGLLKANAAFLMIGGDHSLTVAALRAVAEQHGPLAVVHLDAHSDTNPAFYGGRYHHGTPFRHGIDLIDPAAMVQIGIRGHKPDSLDYARGHGVRVVTADEFGTADLIREKVGQRPVYVSVDIDVVDPAFAPGTGTPAPGGLLSREVLALLRCV--GDLKPVGFDVMEVSPLYDHGGITSILATEIGAELLYQYARAH... 301
3 -92.500d3nioa_ c.42.1.0 (A:) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}  ali model 3D-neighbors follow..  27  30..AELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATGAAPFDLNVADIGDVAINTFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIKKKHGKVGLVHVDAHADVNDHMFGEKIAHGTTFRRAVELLDCDRVVQIGLRAYTAEDFNWSRKQGFRVVQAEECPLMAEVREKVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGC--QGLDLIGCDLVEVSPPYDTTGNTSLLGANLLYEMLCVLPGVVRR. 316
4 -92.100d3pzla_ c.42.1.0 (A:) automated matches {Thermoplasma volcanium [TaxId: 273116]}  ali model 3D-neighbors follow..  31  17.VNGYEEAKYVVFGIPFDNTSSYRRGSKYAPDSIRGAYVNLESYEYSYGIDLLASGMADLGDMEES-EDVEYVIDTVESVVSAVMSDGKIPIMLGGEHSITVGAVRAL---PKDVDLVIVDAHSDFRSSYMGNKYNHACVTRRALDLLGEGRITSIGIRSVSREEFEDPDFRKVSFISSFDVK-IDKYIEEVKSRRVYISVDMDGIDPAYAPAVGTPEPFGLADTDVRRLIERL---SYKAVGFDIVEFSPLYD-NGNTSMLAAKLLQVFIASREKYYK.. 290
5 -90.000d1woha1 c.42.1.1 (A:3-304) Agmatinase {Deinococcus radiodurans [TaxId: 1299]}  ali model 3D-neighbors follow..  27  23...GDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFAD-VPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACELPNLVHITTVGLRGLDPEAVAAARARGHTIIPMDDVTLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAA-ANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDH.... 301
6 -75.100d4myla_ c.42.1.1 (A:) automated matches {Trypanosoma cruzi [TaxId: 5693]}  ali model 3D-neighbors follow..  18  11.AQREEDADIVIIGFPYDEGCGGRAGAKKGPAAFRFFLQRLGSVNNLELVDASHLKLYDAGDITAS--TLEEAHEKLESKVFTVLARGAFPFVIGGGNDQSAPNGRAMLRAFGDVGVINVDSHLDVRPPLSDGRVHSGTPFRQLLESFSGKRFVEFACQGSGALHAQYVRDHQGHLMWLSEVAALEDAFGLTG-KNTFFSFDVDSLKSSDMPGVSCPAAVGLSAQEAFDMCFLAG-KTPTVMMMDMSELNPLVE-EYRSPRVAVYMFYHFVLGFATR.... 296
7 -71.300d2aeba_ c.42.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  22  1......SRTIGIIGAPFSKG-QPRGGVEEGPTVLRKAGLLEKLKEQECDVDYGDLPFADIPNDSPNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTSGNLHGQPVSFLLKCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDVMEETLSYLKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTG-LLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREG 306
8 -69.900d2ef5a_ c.42.1.0 (A:) automated matches {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  22  2........RVAVVGVPMDLGAN-RRGVDMGPSALRYARLLEQLEDL-------GYTVEDLGDVPVSLARASRAAALVLKERLAALPEGVFPIVLGGDHSLSMGSVAGAAR-GRRVGVVWVDAHADFNTPESPSGNVHGMPLAVLSGLVDPKDVVLVGVRSLDPGEKRLLKEAGVRVYTMHEVDIAEEVLKHLQGLPLHVSLDADVLDPTLAPGVGTPVPGGLTYREAHLLMEILA-ESGRVQSLDLVEVNPILDERNRTAEMLVGLALSLLGKRI...... 289
9 -68.100d1xfka_ c.42.1.1 (A:) Formimidoylglutamase HutG {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  21  29..LANQEPGVALIGFECDAGVEGRTGAKHAPSLIKQALANLAWHH--------PIPIYDLGNIRCEGDELEQAQQECAQVIQQALPHA-RAIVLGGGHEIAWATFQGLAQHFPRIGIINFDAHFDLRSELAPVRPSSGTPFNQIHHFCQQQHYACLGVSRASNTPALFERADKLAFSPLSLKDHLTQLQHFIDDDYLYLTIDLDVFPAASAPGVSAPAARGVSLEALAPYFDRILHYKNKLMIADIAEYNPSFDIDQHTARLAARLCWDIANAMAEQVQ.. 322
10 -7.790d4cjxa2 c.2.1.0 (A:125-297) automated matches {Trypanosoma brucei [TaxId: 999953]}  ali model 3D-neighbors follow..  14  38......................................................................................CGKRVVVLGRGDIAGLPVATLLANEDATVTV----VHSATPLCDIADIVRASDIV-----------VSAAGQPGLVRGEW----KLGAAVIDVG----TTPVADPSKVPGYRLVGDVCFDVARKRAAYITPVPGGVGPVTVSMLLKNTLTM............................................ 166

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.