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Query: 4o4a_A mol:protein length:170 Lipoprotein, putative, from PDB1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSGVDLGTENLYFQSNAKETTDTIYLIPEEYEGDLIVVYNVPGAELLPKEEEFSVVTFAADGTAVTSTKNMKFGTVNDLYYTVNKEGQRTKIDSSCIHFSSTGSRTENSWEFPFANLEVTRTACSQEFSANGREVPENQEHPAEKKMRDLMQRIQERYMNKVKLast
1 -9.880d3hpya1 d.32.1.0 (A:2-146) automated matches {Pseudomonas sp. [TaxId: 237609]}  ali model 3D-neighbors follow..  12  41..........RVYFKCWDERDHSCYIIREADTAGIDFFGFKVLDKATLEKLDA----DLQAYGLTTTRIPAGEMLETGERVRFELPSGHLIEL....................................................................... 119
2 -9.640d4ghga1 d.32.1.3 (A:3-147) Homoprotocatechuate 2,3-dioxygenase {Brevibacterium fuscum [TaxId: 47914]}  ali model 3D-neighbors follow..  13  48..........QIYLRSFEEFIHHNLVLTKGPVAALKAMAFRVRTPEDVDKAEA----YYQELGCRTERRKDGFVKGIGDALRVEDPLGFPYEF....................................................................... 126
3 -8.250d2f0ca1 b.21.1.3 (A:63-163) Baseplate protein (bpp), C-terminal domain {Lactococcus phage tp901-1 [TaxId: 35345]}  ali model 3D-neighbors follow..  11  23...TVEYSIGGEISSSILANSNLVNRSVPNEFCNRCSLVGHMVGG------WNAFHIDIPSSGVCQWFGPTASSGTPRGTGTYPID.............................................................................. 101
4 -7.430d2ehza1 d.32.1.0 (A:4-137) automated matches {Pseudomonas sp. [TaxId: 69011]}  ali model 3D-neighbors follow..  13  40............RFYLRMDYWHHRIVVHHNGQDDLEYLGWRVAGKPEFEALGQ----KLIDAGYKIRICDKVEAQ-VLGLMKTEDPGGNPTEI....................................................................... 118
5 -7.370d5dyma_ a.4.5.0 (A:) automated matches {Peptoclostridium difficile [TaxId: 645463]}  ali model 3D-neighbors follow..  10  8........................VSILEKKDCYGYEIAKQVRERSEFELKEGTMLKRMESKNLIKSYYSNEQSSGGRRKYYNLTNEGKDF......................................................................... 77
6 -7.200d2zyqa1 d.32.1.0 (A:2-132) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  12  38............ALYLRMDDFPARLVVVPGEHDRLLEAGWECANAEGLQEIRN----RLDLEGTPYKEATAAELA-VDEMIRFADPSGNCLEV....................................................................... 116
7 -6.980d1kw3b1 d.32.1.3 (B:1-132) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Pseudomonas sp. [TaxId: 306]}  ali model 3D-neighbors follow..  17  38.............ALYRADQRAWRIAVQPGELDDLAYAGLEVDDAAALERMAD----KLRQAGVAFTRGDEALMQ-VMGLLCLQDPFGLPLEI....................................................................... 115
8 -6.800d2bsya1 b.85.4.1 (A:4-116) Monomeric viral dUTPase {Epstein-Barr virus [TaxId: 10376]}  ali model 3D-neighbors follow..  12  71..........................IIDPGYTGELRLILQNQRRYNSTLRPSELKIHL......................................................................................................... 103
9 -6.490d1s7ia1 d.58.4.9 (A:7-122) Hypothetical protein PA1349 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  1MKYLCLIYFDEAKLAAVPAEELAAIVDECMTYSDQLGKAGHYIASHALQSVQTATTLRHQGGRLAMTDGPFAETKEQLGGFYLIEARDLNQALQ...................................................................... 94
10 -6.430d3brgc2 b.1.18.0 (C:360-474) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  14  27.............LQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAF-REGWRWVRQPVQVPVTLVRNDG............................................................................ 100

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.