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Query: 5YW3 Entity 1(prereleased), from PDB1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ADFEVHMLNKGKDGAMVFEPASLKVAPGDTVTFIPKDKGHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTPHYGMGMVGVVQVGDAPANLEAVKGAKNPKKAQERLDAALAALGNLast
1 -69.900d2ux6a_ b.6.1.1 (A:) automated matches {Achromobacter cycloclastes [TaxId: 223]}  ali model 3D-neighbors follow..  97  1ADFEVHMLNKGKDGAMVFEPASLKVAPGDTVTFIPTDKGHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTPH--PFMVGVVQVGDAPANLEAVKGAKNPKKAQERLDAALAALGN 122
2 -69.900d3ef4a_ b.6.1.0 (A:) automated matches {Hyphomicrobium denitrificans [TaxId: 53399]}  ali model 3D-neighbors follow..  40  1AEHIVEMRNKDAGNTMVFQPGFVKVEAGDTVKFVPTDKSHNAESVREVWPEGVAPVKGGFSKEVVFNAEKEGLYVLKCAPHYGMGMVVLVQVGKP-VNLDQIKEYKATGLAKKRLDGEIAKVVQ 124
3 -55.300d4dp9x_ b.6.1.1 (X:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]}  ali model 3D-neighbors follow..  31  1....IDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGPHNIVFDEDSIPSGVEDLLNAKGETFEVALSNKGEYSFYCSPHQGAGMVGKVTVN............................... 99
4 -51.800d2bz7a_ b.6.1.1 (A:) Plastocyanin {Dryopteris crassirhizoma [TaxId: 97234]}  ali model 3D-neighbors follow..  25  1....AKVEVGDEVGNFKFYPDSITVSAGEAVEFTLVGEPHNIVFDIPAGAPGTNDLLSEDEPSFKAKVSTPGTYTFYCTPHKSANMKGTLTVK............................... 102
5 -51.000d3cvba_ b.6.1.1 (A:) Plastocyanin {Phormidium laminosum [TaxId: 32059]}  ali model 3D-neighbors follow..  31  2...TFTVKMGADSGLFQFEPANVTVHPGDTVKWVNNKLPHNILFDDKQVPGASSQLMFSPGESYEITFSSAGTYTYYCAPHRGAGMVGKITVEG.............................. 105
6 -42.300d2qdva_ b.6.1.1 (A:) Amicyanin {Paracoccus denitrificans [TaxId: 266]}  ali model 3D-neighbors follow..  35  19GAIVVDI------AKMKYETPELHVKVGDTVTWINREAPHNVHFVAGVLGEAAKGPMMKKEQAYSLTFTEAGTYDYHCTPHP--FMRGKVVVE............................... 105
7 -26.900d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]}  ali model 3D-neighbors follow..  23  12ETPAQTVEVRAAPDALAFAQTSLSLPANTVVRLDFVNQNHNWVLVNGGDDVAAAVNTAAQNGSVTFRTPAPGTYLYICT-HYLAGMKGTLTVTP.............................. 139
8 -26.300d2cala_ b.6.1.1 (A:) automated matches {Thiobacillus ferrooxidans [TaxId: 920]}  ali model 3D-neighbors follow..  22  57.................KKNPTLEIPAGATVDVTFINTNHSFDITKKGPPGTGFSPVPKDGKFGYTDFTTAGTYYYVCQ-MAATGMFGKIVVK............................... 153
9 -22.800d2aana_ b.6.1.0 (A:) automated matches {Chloroflexus aurantiacus [TaxId: 1108]}  ali model 3D-neighbors follow..  27  2...PVTIEIGSKGEELAFDKTELTVSAGQTVTIRFKNNSHNWILVKGGEAEAANIANAGLSAEVTFTAPAAGTYLYICTPGHYPLMQGKLVVN............................... 123
10 -22.800d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]}  ali model 3D-neighbors follow..  16  22GVTVKNIRAF----NVLNEPETLVVKKGDAVKVVVENKSEGFSIDAFGVQEVIKA---GETKTISFTADKAGAFTIWCQLHPKNILPGTLNVVE.............................. 112
11 -21.100d2ccwa_ b.6.1.1 (A:) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]}  ali model 3D-neighbors follow..  24  1AQCEATVES---NDAMQYNVKEIVVKSCKQFTMHLKHVGHNLVLTKDADKQAAHTKVIGGGESDSVTFDAGENYAYFCSPGHWAMMKGTLKLGS.............................. 129
12 -20.700d4knua1 b.6.1.0 (A:25-153) automated matches {Nitrosomonas europaea [TaxId: 228410]}  ali model 3D-neighbors follow..  30  35....................PVVRVTEGDTVEFTLINDSHSMDFHAARLDVVEDFESIKPGETKKYTFDNPGVFFYHCIQHIARGMYGVIIVDPKDAN.......................... 124
13 -20.300d2iwka2 b.6.1.0 (A:467-597) automated matches {Achromobacter cycloclastes [TaxId: 223]}  ali model 3D-neighbors follow..  26  37.....KVRVYMTSVAPSFSQPSFTVKEGDEVTVIVTNLDEIDDLTHGTMGNHGVAMEVGPQQTSSVTFANPGVYWYYCQ-H--MEMRGRMFVEP.............................. 131
14 -17.800d2bw4a1 b.6.1.3 (A:7-166) Nitrite reductase, NIR {Achromobacter cycloclastes [TaxId: 223]}  ali model 3D-neighbors follow..  25  64..................GP-LMVVHENDYVELRLINPDHNIDFHAATGAGGGALTQVNPGEETTLRFTKPGVFVYHCAPHVTSGMNGAIMVLPRDG........................... 155
15 -17.200d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]}  ali model 3D-neighbors follow..  22  31NQYTVYVLAF----AFGYQPNPIEVPQGAEIVFTSPDVIHGFHVEGTNINVEVLPGEVS---TVRYTFKRPGEYRIICNQYCGLGMFGTIVVKE.............................. 122
16 -16.200d4enza2 b.6.1.0 (A:193-338) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  52............NGYTFGSLPGLSMCAEDRVKWYLFGMGHGQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCLNHLKAGLQAFFQVQE.............................. 145
17 -16.100d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  15  45.............NGMIYNLPGLRMYEQEWVRLHLLNLGHVVENGTQQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTGEIQRAGMQTPFLI................................ 138
18 -15.700d4knua2 b.6.1.0 (A:154-309) automated matches {Nitrosomonas europaea [TaxId: 228410]}  ali model 3D-neighbors follow..  14  48....................SWLQAKPGERVRIYFVNAGHDRVYPSGN-QYALQSYLIGAGDAATLDLPVEGANAIVDH-HAHSGAIAVIMFTNDADP.......................... 145
19 -15.200d1sdda2 b.6.1.3 (A:181-296) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  12  27............NGYVNGTMPDITVCAHDHISWHLIGMSNGQVLEQNHHKISAITLVSATSTTANMTVSPEGRWTIASPRHFQAGMQAYI.................................. 116
20 -15.200d2bw4a2 b.6.1.3 (A:167-340) Nitrite reductase, NIR {Achromobacter cycloclastes [TaxId: 223]}  ali model 3D-neighbors follow..  19  37YEDAVKAMRTLTPTHIVFNDHALTAAVGERVLVVHSQANHDYVWATGKFDLDQETWLIPGGTAAFYTFRQPGVYAYVNIEAFELGAAGHFKVTGEWND.......................... 162
21 -14.200d4e9sa3 b.6.1.3 (A:336-516) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  76.............NGQAFDMNKPAAAKGQYERWVISGVGHRILSENGKPPAAVEGNVSEVLVKFNHDAPKEHAYMAHCLEHEDTGMMLGFTV................................ 181
22 -13.900d4e9sa1 b.6.1.3 (A:29-170) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  45.................LLGPAVKLQRGKAVTVDIYNQ-HGLEVPGEV--DGGPQGIIPPGGKRSVTLQPAATCWFHPHQHGKTGLAGLVVIEDDEIL.......................... 140
23 -13.600d1kbva2 b.6.1.3 (A:164-314) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]}  ali model 3D-neighbors follow..  22  23QPFDMDKAVAEQPEYVVFNDNALKAKAGETVRMYVGNGGHDKVYVEGLINENVQSTIVPAGGSAIVEFDIPGNYTLVD--HSNKGALGQLKVEGAENP.......................... 148
24 -13.600d4enza5 b.6.1.0 (A:706-884) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  86...................P-QLHADVGDKIIFKNMATRPYSIHAHGVQTESSTVTPTLPGETLTYVWKIPIPWAYYSVKDLYSGLIGPLIVCRRP............................ 179
25 -13.300d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]}  ali model 3D-neighbors follow..  21  29.......................KFHVGDSLLFNYNNKFHNVLQVDQE--NSSSPAASYTSGADSIPLKRPGTFYFLCG-HCQLGQKVEIKV................................ 102
26 -13.300d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}  ali model 3D-neighbors follow..  21  31.......................TFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERERLDELGMHYFVCT-HCSNGQKLSINVVAAN............................ 110
27 -11.900d4enza1 b.6.1.0 (A:1-192) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  76...................P-IIKAETGDKVYVHLKNLAHGITYPDNTTDFQRADDKVYPGEQYTYMLLATVTRIYHSPKDIASGLIGPLIICKKDS........................... 185
28 -11.900d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}  ali model 3D-neighbors follow..  22  31.................FPGPTIRANAGDSVVVELTNK-HGILQRGTPWADGTASISINPGETFFYNFDNPGTFFYHG--HLGMGLYGSLIVDPPQGKKE........................ 129
29 -11.200d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]}  ali model 3D-neighbors follow..  20  18.......................SFRAGDVLVFKYIKGQHNVVAVNGR--SAPRGARTYSSGQDRIKLT-RGQNYFICS-HCGGGMKIAINAK............................... 91
30 -10.900d3pxla1 b.6.1.0 (A:1-130) automated matches {Trametes hirsuta [TaxId: 5327]}  ali model 3D-neighbors follow..  17  30................VTPGPLVAGNIGDRFQLNVIDN-HGFFQHGTNWADGPAFINQSPGHSFLYDFDQAGTFWYHS--HLSTGLRGPFVVYDPN............................ 130
31 -10.800d2wsda3 b.6.1.0 (A:357-512) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  15  33............NNKRWHDPVTETPKVGTTEIWSPTRGTHRVLDRRPFDIARYDTIQAHAGEVLRIAAPYSGRYVWHCLEHEDYDMMRPMDITDPH............................ 156
32 -10.700d2q9oa1 b.6.1.3 (A:1-162) Laccase {Fungus (Melanocarpus albomyces) [TaxId: 204285]}  ali model 3D-neighbors follow..  17  63................NIMGPNIVANWGDTVEVTVINN-HGIHQKDTNLHDGANGVTPPKGGQRTYRWRQYGTSWYHS--HFSAGVVGTIQINGPASL.......................... 161
33 -10.500d4enza3 b.6.1.0 (A:339-553) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  74ASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGIGVRFNKNN--VPPSASHVAPTETFTYEWTVPLAKMYYSTKDIFTGLIGPMKICKKGS........................... 207
34 -10.100d3rnqa_ b.1.1.1 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  13  1..............SLTFYPAWLTVSEGANLNWNRLSPSNSNGLSQPVQDARFQIIQLPNRHDFHMNINDSGIY--LCG............................................. 91
35 -9.590d1wgoa1 b.1.3.1 (A:8-117) VPS10 domain-containing receptor SorCS2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  24  28.................IQGEAVAVRPGEDVLFVQEQGDVLTTKYQVDLGDGFKAMYTLTGEPIRHRYESPGIYRVSVRAENTAGHVLFVQV................................ 110
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.