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Query: 5Z0M Entity 1(prereleased), from PDB1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTVRKNQATLTADEKRRFVAAVLELKRSGRYDEFVRTHNEFIMSDTDSGERTGHRSPSFLPWFRRFLLDFEQALQSVDSSVTLPYWDWSADRTVRASLWAPDFLGGTGRSTDGRVMDGPFAASTGNWPINVRVDSRTYLRRSLGGSVAELPTRAEVESVLAISAYDLPPYNSASEGFRNHLEGWRGVNLHNRVHVWVGGQMATGVSPNDPVFWLHHAYVDKLWAEWQRRHPDSAYVPTGGTPDVVDLNETMKPWNTVRPADLLDHTAYYTFDALELast
1 -119.000d3awua1 a.86.1.3 (A:2-273) Tyrosinase {Streptomyces castaneoglobisporus [TaxId: 79261]}  ali model 3D-neighbors follow..  99  1.TVRKNQATLTADEKRRFVAAVLELKRSGRYDEFVRTHNEFIMSDTDSGERTGHRSPSFLPWHRRFLLDFEQALQSVDSSVTLPYWDWSADRTVRASLWAPDFLGGTGRSTDGRVMDGPFAASTGNWPINVRVDSRTYLRRSLGGSVAELPTRAEVESVLAISAYDLPPYNSASEGFRNHLEGWRGVNLHNRVHVWVGGQMATGVSPNDPVFWLHHAYVDKLWAEWQRRHPDSAYVPTGGTPDVVDLNETMKPWNTVRPADLLDHTAYYTFDA.. 272
2 -79.000d1js8a1 a.86.1.1 (A:2503-2791) Mollusc hemocyanin {Giant octopus (Octopus dofleini) [TaxId: 267067]}  ali model 3D-neighbors follow..  19  1AIIRKNVNSLTPSDIKELRDAMAKVQADTGYQKIASYHGIPLSCNGTAYACCQHGMVTFPNWHRLLTKQMEDALVAKGSHVGIPYWDWTTTFANLPVLKDNSFHHAHIDVANTDTTRSPRAQLFDDP-----------------DKGDKSFFYRQIALALEQTDFCDFEIQF--------------EIGHNAIHSWVGGSSTLHYTSYDPLFYLHHSNTDRIWSVWQALQKYRGLPYNTANCEINKLVKPLKPFAHSTGATSFDYHLGYDYDNLN 271
3 -68.900d4z0ya_ a.86.1.0 (A:) automated matches {Coreopsis grandiflora [TaxId: 13449]}  ali model 3D-neighbors follow..  16  51VRMRWPAHKGTKKQVDDYRRAIAAMRALPSFVSQAKIHYTQVDSGFPDIDIQIHNSWLFFPFHRWYLYFYERILGSLEPNFALPYWKWDEPKGMPISNIFLGDASNDANHIEDRIVDLDYDGKDKDIPDQQQVACNLSTVYR-----DLVRNGVDPTSFFGGKYVAGDSPVANGDPSVGSVEAGSXTAVHGDPTQPNNEDMGNFSAGYDPVFYIHHANVDRMWKLWKELRLPGHVDITDPDWLNASYVDENKDLVRVYNKDCVNLDLKYNFIE.. 346
4 -29.400d1hc1a2 a.86.1.1 (A:136-398) Arthropod hemocyanin {Spiny lobster (Panulirus interruptus) [TaxId: 6735]}  ali model 3D-neighbors follow..  12  22AKMTQKPGTFNVSFTGTKKNREQRVA---GEDIGMNIHHVTFWWEDSYGYHLDRKGELFFWVHHQLTARFDFE-RLSNWLDPVDELHWDRIIREG---FAPLTSYKYGGEFPVRPDNIHFEDVDGVAHVHDLEITESRIHEAIDHGYITDSDGHTID---IRQPKGIELLGDIIESSKYSSNVQYYGSLHNTAHVMLGGVMEHFTATRDPSFFRLHKYMDNIFKKHTDS.............................................. 262
5 -25.700d1llaa2 a.86.1.1 (A:110-379) Arthropod hemocyanin {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}  ali model 3D-neighbors follow..  11  36VDVQDTGNILDPEYRLAYYR-----EDVGINAHHWHWHLVYTWNPKYFGKKKDRKGELFYYMHQQMCARYDCE-RLSNGMHRMLPFNNF------DEPLAGYAPHLTHVASGKYYSPRPDGLKLRDLGDIEISEMVRMRERILDSIHLGYVISEDGSHKTLDELHGTDILGALVESSYESVNHEYYGNLHNWGHVTMAGVMSDTTSLRDPIFYNWHRFIDNIFHEYKNT.............................................. 268
6 -6.790d2cx1a2 d.17.6.4 (A:1-90) Hypothetical protein APE0525, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}  ali model 3D-neighbors follow..  16  11...RLEARALSKKERRSLLERLKPYYTRIPFSEKADLRLVKARTDSGEYE-TVDGVPCLFEWSDGRIYPTLQCLKAFGVD-----W............................................................................................................................................................................................. 89
7 -5.600d4wiqa2 d.272.1.1 (A:179-303) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  7  13VILDADLTKMTPKQRIDLLNRMQSFSEVEL----NRLFDMSAFMAGPGNAKKVVENGALLSWSVPDIRGVETPAREMSAQLGYPVVGWHIANKKPT................................................................................................................................................................................... 125
8 -5.590d1dlca2 b.77.2.1 (A:290-499) delta-Endotoxin (insectocide), middle domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}  ali model 3D-neighbors follow..  12  4KEVKTE---LT---RDVLTDPIVGVNNLRGYGTTFSNIENYIRK------------PHLFDYLHR-IQFHTRFQPGYYGNDSFNYWSGNYVSTRPS-------------IGSNDIITSPFYGNKSSEPVQNLEFNGEKVYRAVANTNLAVWPSAVYSGVTKVEFSQYNDQTDEASTQTYD-ETTDEPLEKGYSHNYVMCFLMQGSRGTIPVLTWTHKSVD....................................................... 210
9 -5.540d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  51.SVELAHYDVLLXEVTRIYNVIGTLRGAVEPDRYVILHRDSWVFGGIDPQS---GAAVVHEIVRSFGTLKKEGWRP---TILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYIN----ADSSIEGNYTLRVDCTPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKLGSGNDFEVFFQRLGRYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHLT..................................... 287
10 -5.400d4f8xa_ c.1.8.0 (A:) automated matches {Penicillium canescens [TaxId: 5083]}  ali model 3D-neighbors follow..  11  37..LKQNFGEITPANAMKF----MYTETEQNVFNFTEGEQFLEVAERFGSKVRCHN----LVWASQLTAVMKNHIFKTHFGRRCYSWDVVNEA-----------------NGDGTFSSSVWYDTI----------GEEYFYLAFKYAQEALAQIGANDVKLYYNDYGIENPGTKSTAVLQLVSNLRKRGI-----------------RIDGVGLESHFIVGETPSLADQLATKQAYIKANLDVAVTELDVRFSTVPYYTAAAQKQQAEDYY..... 269
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.