current user: public
If you have questions about the server, please let us know.

Query: 5mmi_V mol:protein length:192 plastid ribosomal protein uL24c, from PDB1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190
# Score Template Links and tools%idFirst MAAMAALQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRKVRYLIKTGEIVDTPDRWKEIQNKKESETAVAVAALast
1 -47.400d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  37  3..................................................................KMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAKC........................... 101
2 -30.300d1vq8t1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Haloarcula marismortui [TaxId: 2238]}  ali model 3D-neighbors follow..  20  28.......................................................SADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGE-----------EVPRPLDTSNVRVTDLDLEDEKREARLESEDDS................................... 118
3 -10.300d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  27  11.....................................................................FKMGDHVKVIAGRFEGDTGLIVRVEENFVILFMHELKVLPRDLQLCSE........................................................................... 62
4 -8.830d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  24  1.................................................................SKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV.......................................................................................... 37
5 -8.650d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  15  4.....................................................................IEVGRICVKVKGREAGSKCVIVDII-DDNFVLVTGPKDITGVKRRRVNILH---------LEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKI........................... 89
6 -8.280d2io8a2 d.3.1.15 (A:10-200) Glutathionylspermidine synthase, amidase domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  104......................................................................VAGALLIWDKGGEFKDTGHVAIITQLHG----NKVRIAEQNVIHSPLPQGQQWTRELEMVVENGCYTLKDTFDDTTILGW--------MIQTEDTEYSLP...................... 191
7 -7.370d1vhya1 b.122.1.2 (A:3-73) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  15  27................................................................ARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILG........................................................................................ 66
8 -7.280d5o95a1 b.122.1.0 (A:3-75) automated matches {Legionella pneumophila [TaxId: 446]}  ali model 3D-neighbors follow..  18  32...................................................................LRMEQGEQLTLFNGDNKEFTASIERVKKKQVFVRIAS........................................................................................ 68
9 -6.810d1vhka1 b.122.1.2 (A:2-73) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  15  29................................................................VNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLV.......................................................................................... 66
10 -6.330d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  13  14.......................................................EAHPIPGTRLKRLVLDAGRTVEVVSGAENARKGIGVALALPGTELPGLGQKVGERVIQGVRSF---GMALSPRELGVGE.......................................................... 89
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.