Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public

If you have questions about the server, please let us know.

Query: 2r50_A mol:protein length:165 Non-symbiotic hemoglobin, from PDB1018

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .
# Score Template Links and tools%idFirst MALAEADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLRDSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMKPDALast
1 -53.500[C] COG1017 Hemoglobin-like flavoprotein  ali follow..  16  1...........MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFN---------MSNQRNGDQREALFNAIAAYASNIENLPALL---PAVEKIAQKHTSFQIKPEQYNIVGTHLLATLDEMFN---PGQEVLDAWGKAYGVLANVFIHREAE.. 137
2 -25.700[C] KOG3378 Globins and related hemoproteins  ali follow..  20  248.AKIKMRQEMDRITERQKHIFTETFPVIFKEYKRNGLVLFAKYFSEFPHYKNIWPQFRTQDSALLASNELANHCSVYMSGLKV.................................................................................. 330
3 -9.480[R] COG2346 Truncated hemoglobins  ali follow..  11  33............................DATVRALTRRFYELM-DTLPEAARCRAI---------HPADLSGSEAKFYDYLTGYLGG----PPVYVEKHGHPMLRRRHFVAPIGPAERD----EWLLCFRRAMDETIENAKLREIIWAPVERLAFHMQNQEADN. 150
4 -6.110[R] COG2316 Predicted hydrolase (HD superfamily)  ali follow..  15  13..............................................................THVKTKNLVKHCLAAEAVMRALAREFNEDEEKWGLAGLLHDLDYEHGLKTLEILKDEDVPEDVLNAILAHCEKKTPETLMEKA.................... 103
5 -5.970[S] COG3945 Uncharacterized conserved protein  ali follow..  12  4........NSIKTLMEEHTVILKALEILNVIDINENIKNFVDNCHHVKEEKVLFDFLEHKGMVGGPIYVMVYEHNKLRDIINRIEARYNEFEELREDLNSLIVLLASHIDKE-NNVLFPTAESLLSDDENKVIYEKEFGKERHERYIELIDTLYGRYINKKSNE. 175
6 -5.790[S] COG3148 Uncharacterized conserved protein  ali follow..  135...................MLDGTWPEAR------------KMFRKCPYLDHLISVDLSRLSAYRLREIHAEGQYCTAEVAIALLDLAGDTEAATSLGEHFTRFKTRYLA....................................................... 215
7 -5.630[S] COG3865 Uncharacterized protein conserved in bacteria  ali follow..  11  17...................................AMNHYMSIFKNSKELSVTRWPKGHADEGKVLVASFELDGVPFLAL-ISLSIDCKTQEEVDHFWTRLTEDGGEPGPCGWLKDKFGVSWQVVPEQLPRLLGDAD-AGRAMNAMMQMGKIDIAKLEAAAK... 155
8 -5.380[H] KOG2524 Cobyrinic acid a,c-diamide synthase  ali follow..  15  142....SATVEKIPLLEERIRIMRASGRVLVDSYHGSYCGLLKKCHNQAQRLIKLFPDFRDVSVYKGRECYMLKRAQILVAETWACFQRFDDIDSITMFADILWQLGCLSYSSDFKKR---------LLKNELIAHNDPMEIEMRGCSIWAVEKILQNINRK..... 302
9 -5.130[I] COG3000 Sterol desaturase  ali follow..  82.................................TFVTYWWHRARHANDTLWRLFHQLHHAPQRIEVFTSFYKHPTEMVFNSFVAYVVMGISIEAGAYYIMFAALGEYHSNLRTPHVLGYLFQRPEMHRIHHQRDRHECNYSDFPIWDMLFGTYEN.......... 209
10 -5.100[O] COG5536 Protein prenyltransferase, alpha subunit  ali follow..  10  52MAKKEYSLRALNLTGFLIMN--TVWAYRFQILNHTPLEWLDEIAEDFQKNYQVWHHRQKILSLTKNYERELEFTKKMFEI-VWILQNFNDSQELKLTNELLEKDIYNNSAWNHRFYVLFETSKVVSWSLEEELN--LFAPDNQSAWNYLCGVLDKSGPSKLDNL. 239

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.