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Query: 2w0c_P mol:protein length:104 PROTEIN P3, from PDB1018

Results of PSI-BLAST search in nr85s
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100
# E-value Template Links and tools%idFirst MNTSVPTSVPTNQSVWGNVSTGLDALISGWARVEQIKAAKASTGQGRVEQAMTPELDNGAAVVVEAPKKAAQPSETLVFGVPQKTLLLGFGGLLVLGLVMRGNKLast
1 3.000e-29UniRef50_A0A1Z3NM19 Uncharacterized protein n=3 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A1Z3NM19_PSEO7  ali  49  7.....PTVAATNGGFWDGANSFLGNALKMWGDYEKVKAVKSSNGITQKEHMNTAELDNGAAVLVDAPKQTAQPREPMVFGLPQKTVLYGFGGLLAVALVMKAMK 108
2 7.000e-26UniRef50_Q9XJR6 Protein P3 n=3 Tax=root TaxID=1 RepID=P3_BPPM2  ali  100  1MNTSVPTSVPTNQSVWGNVSTGLDALISGWARVEQIKAAKASTGQGRVEQAMTPELDNGAAVVVEAPKKAAQPSETLVFGVPQKTLLLGFGGLLVLGLVMRGNK 104
3 4.000e-21UniRef50_A0A2E9SYR1 Uncharacterized protein n=2 Tax=Pseudoalteromonadaceae TaxID=267888 RepID=A0A2E9SYR1_9GAMM  ali  44  1MNPSLPVGAQPTSSIWGDMGGFLSDAVAAYGQFETIKAAKNSTGQGRLEYTSTPELKNGAARLVDQPGQNQNSGETMVFGFPQKNVIMAF.............. 96
4 3.000e-20UniRef50_UPI00046E95D6 hypothetical protein n=1 Tax=Shewanella marina TaxID=487319 RepID=UPI00046E95D6  ali  22  18........SAMSGGFWENMNDGLSSALDVYLKYEQVQAVKDSSAVGQKELTTTVETPNPNTDQTYV-SPSQKLKEQMAEGLQIGTGTMLVGGVALTAL...... 106
5 6.000e-20UniRef50_A0A0M9UJ70 Phage capsid and scaffold n=1 Tax=Pseudoalteromonas sp. SW0106-04 TaxID=1702169 RepID=A0A0M9UJ70_9GAMM  ali  53  4.....PTGGAQPVSNWGTTIGGLSQAVNVYGEYEAIKAAKNSSGQGRLEQSYLPEYDNGAAVQVEAPKQTQQPQEPMIFGVPQKTVLMG............... 90
6 2.000e-19UniRef50_A0A165KCC0 Uncharacterized protein n=3 Tax=Shewanella TaxID=22 RepID=A0A165KCC0_9GAMM  ali  24  23..TQVPTVAPSTTGWFDKVNSGLGNALGLYAQYEQVRAFKNANGTGQKELLETVQTPAPNTMYTYA-SPAEDLKQKMAKGLQVGTGTL-FAVVGGVALL..... 119
7 5.000e-19UniRef50_A8FVD4 Uncharacterized protein n=2 Tax=Shewanella TaxID=22 RepID=A8FVD4_SHESH  ali  45  23....................DFLDLGLNKWAQIEQVNALKDSNPKAQNQLA---EVDQQPLPVVHQP--APKPAETMVFGLPQKTVIAGFAVLLVVGLALRG.. 99
8 4.000e-17UniRef50_A0A167B033 Uncharacterized protein n=2 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A167B033_9GAMM  ali  46  1MSAMIAEGAPQ-QTAWGNIVGGLTSALNIWQQVETVKAARNSTGQGQAEHAATTELDNGAAVLVEAPKPTQAKAEEKLLGLPKNTVLAGGGVLLVILLI..... 109
9 3.000e-14UniRef50_A0A2G2IPN3 Uncharacterized protein n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2IPN3_9PLAN  ali  30  1MNVPIAESA-GNGFNWGGL---LSGALDVYAKVETIKGRKSASGGDQMQAKLRPEMENAATRVQIAPAAAAPSTNIMIGGVSMKNILIGTAGVLLAIFVIK... 101
10 3.000e-14UniRef50_A0A2N5LN13 Uncharacterized protein n=6 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A2N5LN13_9GAMM  ali  41  15...ALPTGAP-DQTNWGNVNSALSNAMNVYAQYEGVQAMKNAAGVGRQSQE-VVELDNGGAVVADVPKTGAQVTEAMVFGFKQKQVIMAF.............. 106
11 2.000e-10UniRef50_A0A1Q8TCM2 Uncharacterized protein n=1 Tax=Chromohalobacter japonicus TaxID=223900 RepID=A0A1Q8TCM2_9GAMM  ali  25  41..........QAKGIFGGVNDVLGDGLNTWINFEKAKGIAESTGQSQEYQRTSTQTPSGN---------RQQPNNAAMAGLP...................... 103
12 2.000e-09UniRef50_A0A1E5IQJ1 Uncharacterized protein n=1 Tax=Shewanella colwelliana TaxID=23 RepID=A0A1E5IQJ1_SHECO  ali  28  9......TTQPVVGSNWGTVQDGLDFGLNTWLKIEQMNAMKDASGAGRKAMDDTVQVESQVVEVVQVPQPNQDLVQQALSGLK...................... 86
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35