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Query: PF02254.18; Q92CZ9_LISMO/5-120; TrkA-N domain, from PfamA32U

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst FAVIGLGRFGGSICRSLVEQGMEVLAIDSDEERVNEYMSIATHAVIANSTDENALRQLGIRNFEHVIVAIGEDIQSSILTTLILKEMGVKYVTAKATNDKHAKLLDKIGADRVVHPLast
1 -28.200[P] COG1226 Kef-type K+ transport systems, predicted NAD-binding component  ali follow..  14  107IILIGWNEKTNRLLKDLQLGAPSKTVVLIDESLTEGPLIENVHFIRGHAADDGTLKRANITEAESVMITADQDMLSVLTLLSVKGLNPLAYCIVEILTDRFVTNAERAGANQIIGT 229
2 -22.100[P] COG0569 K+ transport systems, NAD-binding component  ali follow..  13  3IIILGAGQVGTTLAENLVSEDNDITLVDNESPQLQTLQEKHLRVVQGSPSSPKVLRDAGAADADLMVAVTASDEINMVACQMGYTLFNTPTRIARIRNSEYLREKENIPIDHLISP 125
3 -19.100[S] COG3400 Uncharacterized protein conserved in bacteria  ali follow..  12  6IALILDGIVAKNFLDLVLRHHNFYIVVVKNESLIPKNYPSTFAFHCFDATSSFRLLQVLNDEVSDAFLIIQDFKEQRIIHKIIQTHFKRMCVVLSVKRDGEKTLENN......... 115
4 -15.900[R] COG2910 Putative NADH-flavin reductase  ali follow..  22  4IALIG-GNAGSRILKELSDRGHQVTAIARNPEKIAALPN--VVAKKGDVFDQAALSEL-LKGHDAVISSVHFTASDPATLIEAVRASGVQRYLV...................... 95
5 -13.300[G] KOG1203 Predicted dehydrogenase  ali follow..  26  125ILVAG-GGVGRRIVDILRKRGLPVKALVRNEEKARKMLGPEIDLIVADITKENTLVPEKFKGVRKVINAVSV............................................ 197
6 -12.000[G] COG1023 Predicted 6-phosphogluconate dehydrogenase  ali follow..  23  3LGMIGLGRMGANIVRRLAKGGHDCVVYDHDPDAVKAMAGED--RTTGVASLRELSQRLSAPRVVWVMVPAGNITTAVIEELANTLEAGDIVITYYRDDLRHEKLLFKKGIHLLDCG 120
7 -11.500[H] COG0499 S-adenosylhomocysteine hydrolase  ali follow..  17  261VLVCGYGDVGKGCAEAFDGQGARVKVTEADPINALQALMDGYSVVTVDEA---------IEDADIVITATGN---KDIISFEQMLKMKDHALLGNIGHFDNE.............. 350
8 -11.400[MG] COG0702 Predicted nucleoside-diphosphate-sugar epimerases  ali follow..  19  38VTVFG-GFVGRHVVRMLAKRGYRIRVAVRRPDLAGFLQPLGISFAQANLRYRDSIIKA-VEDADHVVNCVGILAESGRNTFDAVQEFGAKAIAEAARDTGATLTISAIGAD..... 153
9 -11.300[C] KOG2865 NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit  ali follow..  15  71ATVFG-GFLGRYLVQQLAKMGSQVLVPFRGSEDSPRHLKLMVVPMKFDPRDEDSIKAV-MAKANVVINLIGREYETRNFSFEDANHHIAEKLALVCEHGGIMRYISCLGAS..... 188
10 -11.300[S] COG1255 Uncharacterized protein conserved in archaea  ali follow..  22  17VIEVGIGF-YTRIAKRLKELGFDVLAIDINKDAVVNAKNSGLNAEVDDIFNPNISLYMGAK----AIYSIRPTPEMMNYILKISKAVKVPAYIVPLTGDPVPQ............. 114
11 -11.100[E] KOG2380 Prephenate dehydrogenase (NADP+)  ali follow..  16  367IGIVGFGNFGQFLGKTMVKQGHTVLAYSRSDYTDE--------AAKLGVSYFSDLDDLFEEHPEVIILCTSILSTEKVLESLPFQRLKRSTLFVNLFLQTLPQDFDILCTHPMFGP 484
12 -10.900[R] KOG4288 Predicted oxidoreductase  ali follow..  16  3IVVLG-GFLGHNICKLAIAKGYEVVSVSRRGAGGLHNKEDDVEWETLDAQKDPNSLLPVLRDASAVVNSVG............................................. 77
13 -10.800[E] COG1748 Saccharopine dehydrogenase and related proteins  ali follow..  13  5VLIIGAGGVAQVVAHKCAQNSGDIHIASRTVDKCRKIVESVLEAHALDALDVEATKAL--TGSQIVINVGSAFVNMSVLRACMDTGVAYMDTRAAECKEKGITAILGVGFD----P 153
14 -10.700[HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases  ali follow..  18  5VAIIGAGPAGLLLGQLLQRSGIDAVILETRSR---QYVEERIRAGVLEQGTVDTLNEAGVGE...................................................... 63
15 -10.700[R] COG1712 Predicted dinucleotide-utilizing enzyme  ali follow..  21  4IGIVGCGFIGGQICRAIDGGSAELYALDSSESKALELAASLKTCKPSYMKIEELIRGVDLAVRFIVPQALKAGCDVMILSVGALADEELRDTLFGLAKEHNCKLYFPSGA...... 124
16 -10.600[H] COG1893 Ketopantoate reductase  ali follow..  14  6VAVIGSGSIGLLLYAYLKLANWPALLVTNRPEQADHLNKEGLTFVAKSGEHQPILSSFSAEEAEVGFITV--KSFAVKALLPQLQRKKWDGLVFFQNGMTHLEILRQIPARAIC.. 123
17 -10.100[H] KOG1370 S-adenosylhomocysteine hydrolase  ali follow..  11  197AVVAGYGDKGKSCAQALRGFRASVIITKTDPIKALQAAMEGYEVTTMDEA---------CQEGDVFVTTTGC---VDIILGQHFEQTKDDTIVCNTGYFDVE.............. 286
18 -10.000[M] KOG1371 UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase  ali follow..  13  98LVTGGAGYIGSHAALRLLRDSYRVTIVDNNLGAVKTLQQLFLQFIYADLGDPLAVEKIFSENAFDAVMHFANITSNTLGVLEAMARHKVKKLIYSSTCATYGE............. 226
19 -9.900[G] KOG2653 6-phosphogluconate dehydrogenase  ali follow..  18  5FGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGIIGATSIEDFISKLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIISHFPDSNRRYEELKKKGILFVGSG 126
20 -9.900[I] KOG1298 Squalene monooxygenase  ali follow..  21  48VIIVGAGVGGSALAYALAKDGRRVHVIERDMREPERMMGEFMQ-----PGGRLMLSKLGLQD...................................................... 104
21 -9.860[I] COG1250 3-hydroxyacyl-CoA dehydrogenase  ali follow..  16  5VGIIGAGQMGCGIAHVSAAAGYKVQLYDIAADRIEAGLATINGNLMSDEDRKRALSLIDLAQADLVIEAVTEDETVKRKIYGQVCPVMRPDAILATNTSS................ 119
22 -9.770[M] COG1087 UDP-glucose 4-epimerase  ali follow..  17  4LVTGGAGYIGSHTCVQLIEAGHEVVVVDNALHRIEKITGRAPRREPGDIRDRALMEQMIKRHKCTAVIHFACNVLGTLRLLQAMEATGVKKLVFSSSATVYGD............. 130
23 -9.580[R] KOG2820 FAD-dependent oxidoreductase  ali follow..  15  8VIVVGAGIFGSCTAYHCQRLGLRTLLLEQYSLGHSNGSSHGKSRIIRYAHTDPEYVPL-VGDSYLQIEELEKKRGEKLW-----NKLGLLWAATGNQVDSISGHLKKHNID..... 112
24 -9.470[I] KOG2304 3-hydroxyacyl-CoA dehydrogenase  ali follow..  15  25VTIIGAGLMGSGIAQVSANAKLNVTVVDSNQSALEKAQQGIANSLAQTALVSSVLDRISVKDADLVIEAIVENIDIKRKLFAEVEVAAKPTTLITTNTSS................ 145
25 -9.440[Q] COG5310 Homospermidine synthase  ali follow..  15  20VVMIGFGSIGRGTLPLIERHFSRMTVLDPRDTDRKLLDERGFVQEAVTENNYKKLLTPLLTNGGGFCVNLSVDTGSVDLMRLCRK............................... 112
26 -9.400[G] COG0362 6-phosphogluconate dehydrogenase  ali follow..  19  7IGVIGLAVMGQNLILNMNDHGFKVVAYNRTTSKVDEFLQGAAKGIIGAYSLEDLAAKLEKPRKVMLMVRAGDVVDQFIEALLPHLEEGDIIISNYPDTNRRVKALAEKGIRFIGSG 128
27 -9.330[R] COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase  ali follow..  12  26.KYGGEAPYGSRMAIEFAEAGHDVVLAEPARDMLDDAHWKVVEDAGVTVTDNDA----AASEAEIAVLFTPFGKKTFEIAKNITNHLPEGAVIANTCT.................. 120
28 -9.310[R] COG2085 Predicted dinucleotide-binding enzymes  ali follow..  29  8IAILGAGRVGSSLARSAVAAGYEVKVAGSGAVDKIALTAEILMPGAVPSTADQAVKDADI-----VFLAV.............................................. 72
29 -9.310[M] COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase  ali follow..  17  18IGIVGLGYVGLPLMLRYNAIGFDVLGIDIDDVKVDKLNAGQCYIEHIPQAKIAKARASRVSECDALILCVPTPLNK........................................ 102
30 -9.220[R] COG3380 Predicted NAD/FAD-dependent oxidoreductase  ali follow..  25  5IAIIGTGIAGLSAAHALRSAGQTVQLFDKGHGSGGRMASKRSEAGTLD.................................................................... 52
31 -9.150[S] COG4408 Uncharacterized protein conserved in bacteria  ali follow..  13  4LLMIGTGPVAIQLANICYLKSDYEIDMEKSKRLYQAYKKEKQFEVKIQNEAHQHLEKNVKGEYETVVMACTADAYYDTLQQLSLETLQSVKHVI...................... 116
32 -9.130[EH] COG0059 Ketol-acid reductoisomerase  ali follow..  40IVIVGCGAQGLNQGLNMRDSGLDISYALRPEAIAEKRASFQRATENGFKVGT---YEELIPTADLVVNLTPDKQHSKVVADVMPLMKKDSAFGYSH.................... 132

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.