Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF02405.16; K9WIJ8_9CYAN/42-253; Permease MlaE, from PfamA32U

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210
# Score Template Links and tools%idFirst LLEQMATVGVGSLNPVILVAVFAGMIFTIQTARELSRFGAVNFVGGAFSLAFCRELAPILTASIVAGQVGSAYAAEIGAMQISEQIDALYMLKTDPINYLVIPRVVACFLMLPILTILALIMGIAGGVFVGMNFYNVPPDVFLNSVHELLEVRDLLNVVLKSLIFGVLIAIIGCSWGLTTKGGAKGVGQAATSAVVTSWISIFMFDFLISLALast
1 -89.400[Q] COG0767 ABC-type transport system involved in resistance to organic solvents, permease component  ali follow..  28  42SVRQVYFAGVLSVLIVAVSGLFVGMVLGLQGYTQLSKFKSADILGYMVAASLLRELGPVLAAILFASSAGGAMTSEIGLMKTTEQLEAMNVMAVNPVARVVAPRFWAGVFSMPLLASIFNVAGIFGAYLVGVTWLGLDSGIFWSQMQNNITIHDVINGLIKSAAFGVAVTLIAVHQGFHCVPTSEGILRASTRTVVSSALTILAVDFILTA. 253
2 -7.260[S] COG3431 Predicted membrane protein  ali follow..  13  31............IVISLCIGLFSFMAIQVWDMFLLPPLDFHVVTADILFLLILVELFRLLIIYLQEQRISIGVAVEVSIVSALREVIVKGVLETNWSQVLATCAFLLVLGILLVLRV............................................................................................... 137
3 -6.750[T] KOG2290 Rhomboid family proteins  ali follow..  15  657WLSLFLHAGILHCLVSICFQMTVLR--DLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQI--LARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLSFGKFDLYRKRCQIIIFQVVFLGLLAGLVVLFYVYPVRC...................................... 829
4 -5.910[S] KOG1181 FOG: Low-complexity  ali follow..  15  1.........................................................PTCPKIYLSKHIMPQVVTNEAQMLIKNEIE-EELLGLPPATTVMQPVVVLERLSSPLLRSSSGTDQLVAA---SKNSDRVSARNYLKRVDQ----------LLKNTI-----TLVSIKHEPEVHINDTGPPRGQAES.................. 131
5 -5.740[L] KOG2518 5`-3` exonuclease  ali follow..  17  1.......MGIQGLLQFI-VRKYKGQVVAVDTYCWLHKGAIAGFCMKFVNMLLSHGIKPILVQLLREGKVSEARECFTRSINITHAMKVIKAARSQGVDCLVAP--LAYLIVQAIITEDSDL--LAFGCKKVILKMDQFGNGLEIDQARLGMCRQLGDVFTEEKFRYMCI-LSGC-------SSLRGIGLAKACKVLRL.............. 244
6 -5.650[S] KOG4463 Uncharacterized conserved protein  ali follow..  9  50...QYWRILLWQFIYWNSTEVFQALFIIYQARDVERLLGSHRFASFCVYMFILGMFVTPIFSFLYPGPTFLIFAILYQYYYIVPSTVFVRLFNIKTDKFQMVIPMIGLAFSHFPSTFINAFLGWTMGMFYHLSLLPGT.......................................................................... 196
7 -5.620[F] KOG1292 Xanthine/uracil transporters  ali follow..  9  289........GPPQFNTGLFLLFLLSAMTSV-----FESVGDYHAAARVINRGILAELGSLISGLLGPGVGMTTHTENIGVIGVTRVASTMVMAGVFLIILGLITKIGALLSTIP--PLVGGVLASSMAMVVGVAVSNLQTVDMTLSRNMGIFGFSMMFGLIVPKYFKLFPVDTD------WGWFNQILNVLLQMPMFVGALCACILDNSIG.. 491
8 -5.620[R] KOG1490 GTP-binding protein CRFG/NOG1 (ODN superfamily)  ali follow..  11  40.INRLRQFYMRKVKYTNFHAKLSAIIDEFPRLEQIHPFYGDLLHVLYNKDHYKLALGQVNTARNLISKISKDYVKLLKYGDSLYRCKCLKVAALGRMCTVLLEQIRQHMARLPSIDPNTRTVLICG---------NVGKSSFMNKVTRADVDVQPYAFTTKSLFVGHVIDTPGILDRPFEDRNIEMCSITALAHLRAAVLFFLDIS...... 258
9 -5.530[R] KOG3762 Predicted transporter  ali follow..  9  389............FVSVVVMGGGAGLVFSFLYWHLQDIGGSPVLFGILSVVNHASEIITYFYVFKLINKYGHVRVMYLCLAVNF-------------FRFMALSILDNPWMVLPLQILQGACLATVWSCASS----------YISLVAP--HAKQHAQYALQVGYHGIGKGLGSIIGGSVI----SIIGTRTTFVIYGLICLATCAGSFG... 557
10 -5.350[R] COG4239 ABC-type uncharacterized transport system, permease component  ali follow..  16  146.......FGLMLTICSSVMGVLAGALQGGQRLIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSLVVRAEFLRTRNFDYIRAAQALGVSDRDIIMLPNAMVATLTFLPFILCSSITTLTSLDFLG................................................................................. 283
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.