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Query: PF03400.13; Q32H87_SHIDS/20-150; IS1 transposase, from PfamA32U

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst VIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQLast
1 -74.700[L] COG1662 Transposase and inactivated derivatives, IS1 family  ali follow..  29  2...........AFSSGKKNKLWLWKAYDRVTGRLIDWELGNRDSQTLSRLLERLAKWKVTVYCTDDWRPYQQLLDDAFHGISKRETVGIESKNSDNRHWFARFHRPTKVVFRSPYMVDITMAIFAEFRVNG 124
2 -17.700[L] COG3316 Transposase and inactivated derivatives  ali follow..  13  38.....RVDE--TYIRVGGTWCYLYRAITAGGQTLEFYLSPKRNVAAAKRFLAKTDKAPALAKAISELKAEGICPQTVEHRQVKYLNNVIEGDHGRLKRILGPKGA------KNRISAYRTLKGMEAMHSL. 170
3 -15.100[L] COG3676 Transposase and inactivated derivatives  ali follow..  14  71...PVEPDE--SDFGGRRKGKVVVFGILKRNGRVYTVVVDNAKSETLLPVIKKKIMPD-SIVYTDSLSSYDKLDVSKECADRQNHINGIENFWNQAKRVLRKYNGID----------RKSFPLFLKECEFR 203
4 -8.340[L] COG2801 Transposase and inactivated derivatives  ali follow..  13  137.......NQMWQFKIIGWGWVYLSTILDDFSRYVIAWKLCTTAGDVTDTLELALSASGCPRLLSDNGSSYISMKHVRGAPYHPQTQGKIERWHQTLKNRILL--------YFLPGDLEAQIGAFIEHYNHA 280
5 -6.410[L] COG3677 Transposase and inactivated derivatives  ali follow..  33  99...VVELDELWHFLQAKKTSY.............................................................................................................. 116
6 -6.050[S] COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats  ali follow..  12  5VVVMLELLCCIHAYRTGQERYWIFIIF----------VIG-----VAYFVIVMLPETGADRHGHTLLMRLQDKLNPERHLRKLTEELAIA--TNQNHYALANELARLGRYHEAVPHYQQALS......... 114
7 -5.670[S] COG5587 Uncharacterized conserved protein  ali follow..  17  8...........................................GEKAIPFLRALDFHQNREWFLENRDLFEQHLKEPLGDLVETLTAHFEKASLPFVKSQFRIKRDTR-FSRDKAPYNRHLSALLSQ.... 94
8 -5.640[S] KOG4273 Uncharacterized conserved protein  ali follow..  9  80LVMVFDLSELSTLVALQD-----WVSHTDINSFDILLCIGNKVDRVPHHLAHDEYRRRLLKASDPSRDLYSDIDDFGISETEGSSLLGSEDASLDIRGACLEW-----CSENNIEFIEAC........... 189
9 -5.130[L] COG3464 Transposase and inactivated derivatives  ali follow..  13  184.PRIAIDDY----KGDTNAGKYQVIIADADTRKPLD-ILPDRKADTLKRYLQEKGH-HVKAVVMDLSYTFKSAVQKDPFHFCRYIYWALEGVRRRVQKAFHPYHRKRCKRIKHL................. 299
10 -5.080[S] COG3165 Uncharacterized protein conserved in bacteria  ali follow..  7  111......................LADLAEFDPAELLAPYTGDIAAEGISKAMRGGAKFLHHGIKRQQRYVAEAITEEWRMAPGPLEVAWFAEETAAVERAVDALTKRLEKLEAK.................. 201
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;