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Query: PF08066.12; V2XRV5_MONRO/27-118; PMC2NT (NUC016) domain, from PfamA32U

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90
# Score Template Links and tools%idFirst KATRNSMLLPVDIPYHRSMDSEFSKELDNFSARVISLANKLLTLAGTVDASGKGKGKLQNEDDVVDNFHALVVDSMDQMLERTDICLDEIMGLast
1 -20.900[J] KOG2206 Exosome 3`-5` exoribonuclease complex, subunit PM/SCL-100 (Rrp6)  ali follow..  25  45AVTKASGGLPDEYDFYRSF-PGFQAFCETQGDRLLQCMSRVMQYHGCRSNI----KDRSKVTELEDKF-DLLVDANDVILERVGILLDEASG 133
2 -5.620[K] KOG1510 RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7  ali follow..  15  57....................QLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQGTARDLEEVVQKGELLLEKMQYSLECIA. 127
3 -4.850[C] KOG4009 NADH-ubiquinone oxidoreductase, subunit NDUFB10/PDSW  ali follow..  29  224.ALEGDKPLSKDWEYYKKVDPEFDKDQGKKSD............................................................ 256
4 -4.710[C] COG1394 Archaeal/vacuolar-type H+-ATPase subunit D  ali follow..  12  128..........................LDEAAKKFEEALELITELAEIETSIKLLAEEIITTKRRVNALEYVIIPRLKSLKKYISMRLDE... 190
5 -4.480[R] COG1896 Predicted hydrolases of HD superfamily  ali follow..  11  142...RLLDMLPEELRDDFRPFLISNTA-DPDESAIVKQADAICAYLKCLEELSAGNHEYAQDVTLRERHSEEMAYFLQTFAPSFELTLDEIS. 233
6 -4.450[N] COG3352 Putative archaeal flagellar protein C  ali follow..  16  40.......................PKVIDAMNERMTKIENNLGKMTAELEGQKKSLSDMKNELEGIKENVKMVVSLYELVSRDFNPFMDK... 105
7 -4.270[U] KOG2927 Membrane component of ER protein translocation complex  ali follow..  8  228......NILAEEATLKELFRFWPKKDEEEPPKWTSRLFYTVV-AIVVVMLLRRHAPDEAARARYQRRMSNIIDDVLEWSPKLALSGLME... 309
8 -4.240[S] COG3422 Uncharacterized conserved protein  ali follow..  13  6RNFNQGVIMAGWFELSKSSDSQFRFVLKAGNGETILTSELYTSKASAEKGIAS....................................... 58
9 -4.170[C] KOG1647 Vacuolar H+-ATPase V1 sector, subunit D  ali follow..  12  132..........................VQRAKEIYSRAVETLVELASLQTAFIILDEVIKVTNRRVNAIEHVIIPRTENTIAYINSELDE... 194
10 -4.140[G] KOG2855 Ribokinase  ali follow..  12  152SAHMKAMEVAKEAGALLSYDPNLREPLWPSPEEARTQIMSIWDKADIIKVSDVELEFLTENKTMDDKTAMSLWHPNLKLL............ 231
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;