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Query: PF11300.8; L0F544_DESDL/8-135; Protein of unknown function (DUF3102 topsan), from PfamA32U

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst RTPQVIATEINMIVHQTKKILLTNAIEIGRRLKEAKSLVEHGEWGKWLEESVSYSQSTACRLIRICEEYGASLPDGSGTSNLAPVPNLTYTQALLLLGLPEGEREEFIAKNDVATMTKQELQQALRDRLast
1 -7.920[BL] KOG4233 DNA-bridging protein BAF  ali follow..  14  19KSVTELAGIGETLGGRLKDAGFDMAYTVGQYLVLKKD---EELFKDWMKEVCHASSKQASDCYNCLNDWCE......................................................... 87
2 -6.010[M] COG3475 LPS biosynthesis protein  ali follow..  14  52EKKAIALYQLMKDTHELGKNNINYWINSGTLLGAVR----HQGIIPF-DLDISIMHEDEIRLQQILPQFEQL........................................................ 121
3 -5.990[G] COG1925 Phosphotransferase system, HPr-related proteins  ali follow..  11  4...............................................IRNEHGLHARPSANLVNEVKKFTSKITMQNLTRESEVVSAKSLMKIVALGVTQGHRLR-FVAEGEDAKQAIESLGKAIANG 83
4 -5.770[S] COG3112 Uncharacterized protein conserved in bacteria  ali follow..  12  30.................................KVRMSMGHEVVGHWFNEEVKENLALLDEVEQAAHALKGSERSWQRAGHEYTLWMDGEEVMVRANQLAGDEMEEGMNYYDEESLSVEDFLQVVAA. 128
5 -5.640[S] COG4804 Uncharacterized conserved protein  ali follow..  17  10TGYQQIHDGIIHLVDSARTETVRSVWEIGRRIVEFEQGGEARAYGAQLIKRLGFSAKNLRQMRLFYLFFQHVEIRQTVSGELTPLPWSTYVRLLSVK--NADTRSFYEKETLRCGWSVRQLERQIATQ 154
6 -5.190[O] KOG0181 20S proteasome, regulatory subunit alpha type PSMA2/PRE8  ali follow..  4  106.PVSQLVQRVATLMQEYTQSGGVRPFGVSLLICGWDND-PSGAYFAWKATAMGKNAVNGKTFLE------KRYSEDLELDDAVHTAILTLKEGFEGKMTADNIEIGICDQNGFQRLDPASIKDYLAS. 232
7 -5.190[T] COG3452 Predicted periplasmic ligand-binding sensor domain  ali follow..  7  52QVLTNRLTNIHEQIENQLNIHVRQLEQMAGRWERSPTGTEQTDW-----------RLDARAQAEGFDGYQTIQWVDPKFVVRWVEPLPDDEHDIDYANQYPHQIQSLELAARQKNTILSGVVDLDQ.. 166
8 -5.130[O] KOG0182 20S proteasome, regulatory subunit alpha type PSMA6/SCL1  ali follow..  7  110.PVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEE-PAGYYCGFKATAAGVKQTESTSFLE--KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVA. 241
9 -5.070[S] COG3530 Uncharacterized protein conserved in bacteria  ali follow..  8  1.........MPEMEKEQLVEIANTVMPFGKYQGRRLIDLP-EEYLLWFARKDQFPAGKLGELMQITLLIK.......................................................... 60
10 -5.060[S] COG1710 Uncharacterized protein conserved in archaea  ali follow..  12  62..YPKVSKKVLRALEQMGIKVIPVEKGRGRTLMMIEELLKKGKTPREISRDLGIPIRTLYYLLK................................................................ 130
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;