FFAS03 results for PF11799

Query: PF11799.8; B6QQ86_TALMQ/339-497; impB/mucB/samB family C-terminal domain, from PfamA32U

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 .`
#	Score	Template	Links and tools	%id	First	`VMEARAVPTQISIEDSYRGLEHFEDVRKQLQLLSTSLIKRMRTDLIDEEVHKDTNQEDGTRWIAHPRTLRLSTRRRSPKNADGSRDYSYANGRTSRSGPVPKYMFSLAESAEAVAEKLVDDCLVSMFRKLHPDKAFGELSLINVAVTNMVETAGDNKQS`	Last
1	-18.100	`[L] KOG2095 DNA polymerase iota/DNA damage inducible protein`	`ali follow..`	10	325	`.VTPRFYSKSIGCCKKFPNITGLKTLQHWLGELSSEINDRLEKDFIENN--------------RRAKHMVVQYVQDID------------GEEVASSRSTALRDYD-QESIVRLSLDLIKANTKTFLRPGSESALNNAIKFLGISVGKFETVSSGQNK.`	457
2	-15.000	`[L] KOG2094 Predicted DNA damage inducible protein`	`ali follow..`	18	369	`.SESDPRRKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKS------------------IVGGKTVTLKLKLSS-------------FDVLTRSLTPSDVVKSLED---------IQKFSLELLEKEKGK----EIRLLGVRLSQLIFEEDEKK..`	481
3	-11.300	`[L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair`	`ali follow..`	8	234	`.VNSERLRKSVGVERTMEDIHHWSECEAIIERLYPELERRLAK----------------VKPDLLIARQGVKLKFDD-------------FQQTTQEHVWPRL-----------NKADLIATARKTWDERRGGR---GVRLVGLHVTLLDPQMERQ...`	346
4	-9.950	`[L] KOG2093 Translesion DNA polymerase - REV1 deoxycytidyl transferase`	`ali follow..`	10	555	`.LAYEQIRKTVSAEMNFGRFTNSVECEQFLCQLSEEVTKRLVEIRRKARSI----------------NLKIMVRAAEAPVETSKYMGHGVCDIINKSSLIKYATDD---------VNVITTVVLDLMKDADIPPD--ELRGLGIHLTRLEDANEVRKEN`	686
5	-6.060	`[J] COG2260 Predicted Zn-ribbon RNA-binding protein`	`ali follow..`	20	33	`.......PPKFSPEDKYQKYRILQKLLMGKLPIRDETKERLLRDLTS................................................................................................................`	72
6	-5.330	`[K] KOG3334 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA)`	`ali follow..`	12	4	`..GENLAPRDAKVISVILRSLGIEECEPKVIIQLLEFAYRYTTDVLEDALLFAKHTGRTH-------KLALQTKVGRHFVPPPPRQYLSEISTMVNSKPLT..........................................................`	101
7	-5.330	`[K] COG5094 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA)`	`ali follow..`	12	4	`..GENLAPRDAKVISVILRSLGIEECEPKVIIQLLEFAYRYTTDVLEDALLFAKHTGRTH-------KLALQTKVGRHFVPPPPRQYLSEISTMVNSKPLT..........................................................`	101
8	-4.740	`[S] COG3139 Uncharacterized protein conserved in bacteria`	`ali follow..`	3	2	`.........KKRFSNLFHRSGKIMNLDDIINSMTPEVYQRLSTAVELGKWPDGVALTEEQKENCLQLVMLWQARNNTEAQHMTIDTNGQMVMKSKQQ..............................................................`	89
9	-4.710	`[S] COG4701 Uncharacterized protein conserved in bacteria`	`ali follow..`	7	68	`...........................MKVDYERLHILTQLRQNGFGH------------------ISIEVRVNPELYRQSKITSEDA---RAANPRPPLSEHAAHVLLAIADQASDKVKKRLQSLARLAKANQKD.......................`	156
10	-4.710	`[A] KOG2098 Predicted N6-adenine RNA methylase`	`ali follow..`	13	1	`............MSDTW---SSIQAHKKQLDSLRERLQRRQDSGHLDLRNPEAALSPTFRSDSPVPTAPTSGGPKPSTASAVPELATDPELEKSDLALTLPTDAVSICLAISTPDAPATQDGVESLLQKFAAQE.........................`	127

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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