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current user: public |
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| Query: PF15105.6; G1LS64_AILME/13-201; TMEM61 protein family, from PfamA32U |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . | |||||||
| # | Score | Template | Links and tools | %id | First | APVLRYCMTVSGTVLLVAGTLCFAWWSEGDAGAQPGQPAPPTGRPVPEAPSPLLRSVSFFCCGAGGLLLLFGLLWSIKASTRGPPRWDPYRLSRDLYYQTVESSEKESYRLPELAAIPTYEEAMCCSLAEGPPTPAADPVEGGLKDSASGDALLGTQDPLPPPSYESVIGATHGVSGETAPGTAGSCPG | Last |
| 1 | -8.160 | [S] COG4280 Predicted membrane protein | ali follow.. | 18 | 8 | AALGSTSVEFFEVVAIAYAIGSSGYVKEAIWGSIVGSVAIALGTGLQFLPLQPLQIV------IGGLLLWFGWGWAKKSVRRLATGRRAGWIDDQVLEKEGIVLDQESTGFSKLNFLIMTKSVA................................................................. | 130 |
| 2 | -7.830 | [S] COG4872 Predicted membrane protein | ali follow.. | 27 | 1 | .......MATLGGLLLGAAVIMLV-WQE--ASYLGGAWRQARGDKVFPAALYVLGAASF-----GAGIALVGLYWTLGV.............................................................................................................. | 95 |
| 3 | -6.940 | [S] COG1742 Uncharacterized conserved protein | ali follow.. | 14 | 7 | .......YVLAALAEIAGCFGFWAWLRLGKSPAWAVLGVLSLVIFALLLTRIEAGAAGRAFAAYGGVYIIASLAWMQVVEGARPDRWD..................................................................................................... | 87 |
| 4 | -6.890 | [R] KOG3882 Tetraspanin family integral membrane protein | ali follow.. | 10 | 35 | SCCVKYSVFSFNVIFFLLGFGLLL-WAQIEKNT----------VNMLSKASKLYLDPTWPLLIVGFLTFIIGFSGCVGSLRENTSFLTFYQLDNYIRNLLNDVVVGYRDDPDLQLLIDSMQETWMCCGINGADD-----WDRNTYFSIEAREVASPEAGGVPFS......................... | 209 |
| 5 | -6.180 | [S] COG4272 Predicted membrane protein | ali follow.. | 21 | 10 | SYALRIGVSISMFFIIVGVILLFV--KNGGSGYTLAQIASYHSQYLGLIPKGLLDLDGIFFIATGLWVLVFTPITSVVIAL-------SFYLTRNKLYIALS....................................................................................... | 109 |
| 6 | -6.020 | [R] KOG3195 Uncharacterized membrane protein NPD008/CGI-148 | ali follow.. | 24 | 4 | ....................................................LLLSLDFWSVNVTGRLLV-GLRWWNQIDEDGKSHWIFEARKVSPNSIAATEAEA................................................................................... | 57 |
| 7 | -5.680 | [R] KOG3272 Predicted coiled-coil protein | ali follow.. | 9 | 5 | ...FSSNTTNPPTMIYMGVD---VWFHVDKLSSAHVYLRLHSGMTIDSIPEALLIDCCQLVKKLNNVAIVYTMWSNLKKTGDMAVGQVGFHSHKQVKHTVVPTKINEIVNRLEKTRRKDDIDYKEERDARDAKERQKLKKLEQERKDREKKEMLAQNEKKRIEGYEDVDWDAGATTRNDVDPGNLS... | 206 |
| 8 | -5.640 | [O] COG0225 Peptide methionine sulfoxide reductase | ali follow.. | 19 | 3 | ............RAIFAGG--CF-WCMVQPFEEQAGILSVRSGYTGGHLPNPSYEQV---CAKTTGVELYWTQTDPTDAFGQFEDRGDNYRPV--IYYTTERQKEIAEQSKANLQASGRFDQPIVTTIEPAEPFYLAEDYHQGFYKKNPKR...................................... | 152 |
| 9 | -5.590 | [I] KOG4142 Phospholipid methyltransferase | ali follow.. | 12 | 110 | .......VQGIAKLIFCFGSVLSSMYKLGLVGTYLGDFGFLLPERVSGFPFNVNDNPMY----NGSTLCFLST.................................................................................................................... | 174 |
| 10 | -5.580 | [S] COG3182 Uncharacterized iron-regulated membrane protein | ali follow.. | 13 | 382 | NKIANVLFCLAFILISVTGVV--MWWLRRPTGQ--ARLGVPPRFEQDGVWKAGLATLLVIGV-LAGATIVLALLLDGLLVSRIAK........................................................................................................ | 464 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67. |