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Query: PF00208.21; DHE3_ORYSJ/176-408; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase, from PfamA32U

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GGSLGRDAATGRGVMYATEALLTEYSESISGSTFVIQGLGNVGSWAAKLIHQKGGKIVAVGDVTGAIRNKSGIDIPALLKHRSEGGSLEDFYGAEVMDAAELLVHECDVLVPCALGGVLNRENAAEVKARFIIEGANHPTDTEADEILAKKGVIVLPDIYANSGGVVVSYFEWVQNIQGFMWDEEKVNRELQKYMKNAFQNIKDMCKSQNCNLRMGAFTLGVNRVAKATLLRGLast
1 -79.100IDP02649 putative glutamic dehyrogenase-like protein [Salmonella typhimurium LT2] STM1795 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  38  205GGSLGREKATGRGVFVSGLEAARRANIAVEGARVAVQGFGNVGSEAARLFAGAGARVVAIQDHTATLFNATGIDMKALTAWQTEHKQIAGFPGAETIASDAFWRLEMDILIPAALEGQITRQRAEALTCKLVLEGANGPTYPDADDVLASRGILVVPDVVCNAGGVTVSYFEWVQDMASFFWSEEEINARMDKIMTDAIVHVWEKAAEKSCSLRTAAYIVACERILLARKDRG 437
2 -78.000IDP02337 gene: gdhA; glutamate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA1511 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  40  195GGSHGRETATAKGVTICIREAAKKRDIDIKGARVVVQGFGNAGSFLAKFMHDAGAKVIAISDAYGALHDPNGLDIDYLLDRRDSFGTVTKL-FNNTISNKELLELDCDILVPAAIENQITEENANDIKAKIVVEAANGPTTLEATKILTDRGILLVPDVLASAGGVTVSYFEWVQNNQGYYWTEEEVEQRLEKVMVRSFDSIYETAQVRKVNMRLAAYMVGVRKMAEASRFRG 426
3 -73.800IDP92108 NADP-specific glutamate dehydrogenase, putative [Toxoplasma gondii ME49] TGME49_093180 [Toxoplasma gondii ME49]  ali follow..  29  239GGSAMRPEATGYGCVYFVLELLKAQKEGIKGMRCAISGSGNVALYAGEKLATLGAKVMTFSDSSGYIVNEKGFPLGQIQRLKEMKETRSKYSTVKFVPDKRAWEVPCDIAFPCATQNEISEEDAQLLGCRIVAEGANMPTTRDAIRLFKQHGVILCPGKAANAGGVAVSGLEMSQNAMRIEWTREVVDEKLRQIMASIFSKCRSYAAKNEFDLVTGANVAGFVKVADCVIDQG 487
4 -32.200IDP91367 NAD-specific glutamate dehydrogenase [Vibrio vulnificus CMCP6] VV1_2638 [Vibrio vulnificus CMCP6]  ali follow..  15  118GYDHKAMGITAKGGWESVKRHFREMGIDCQTTDFTAIGVGDMAGDVFGMLLSKHIRLQAAFNHLHIFIDPNPDSASSWEERDRLFQLPRSIKMILKMDVDLLWNGGIGTYVKASSENDVLRIDGRDLNAKVVGEGGNLGMTQKGRIEYALKGGRVNTDFVDNVGGVDCSDNEVNIKISNGDMTVKQRNKILESMQDEVGDIVLDDAYRQSESISVTSVVKEQIRFIHTMEKAG 418
5 -10.100IDP02524 gene: ilvC-2; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1852 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  14............................LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVRPGKSFEVAKADGFEVMSVSEAVRT----------------------AQVVQMLQQAHVYKAEVEENLREGQMLLFSHG............................................................................................... 107
6 -9.690IDP95479 S-adenosylhomocysteinase Q5CPH1 [Cryptosporidium parvum]  ali follow..  19  254................LLHGLFNGCIQMLAGKKIVVLGYGEVGKGCAQGLSGVGARVIVTE-----------IDPICALQASME--------GYQVSVLEDVVSEADIFITATGNKDVITVEHMRKMKENAYIANIGH............................................................................................... 356
7 -9.610IDP00643 precorrin-2 dehydrogenase SACOL2638 [Staphylococcus aureus subsp. aureus COL]  ali follow..  12  8...........................DLTNKNVVIVGGGVVASRRAQTLNQYVEHMTVISP-----------TITEKLQNMVDNGVVI----EKEFEPSDI--VDAYLVIAATNEPRVNEAVKKALPEHALFNNVGDA----------SNGNVVFPSAL-HRDKLTIS----VSTDGASPKLTKSIMAELEALYPPSYSSYIDFLYTCRQKIKVLDITYNEKQ......... 174
8 -9.410IDP02330 gene: ilvC-1; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1419 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  15............................LKEKKVAIIGYGSQGHAHAQNLRDNGFDVVVGLRKGKSWDKEDGFSVYTVAEAAK----------------------QADVVMILLQPEVYEEEIAPNLQAGNSLVFAHGPVNVDVFLVAPKGPGHLVRRTFSEGGAVPALFAVYQDATGVATEKALSYADGIGATRAGVLETTFKEETETDLFGEQGGVTALVKAGFETLVDAG 217
9 -9.010IDP92093 adenosylhomocysteinase, putative [Toxoplasma gondii ME49] TGME49_025050 [Toxoplasma gondii ME49]  ali follow..  18  240................LPDGIMRATDVMLGGKRVVICGFGDVGKGCAAAMKGAGARVVVTE-----------VDPICALQAAME--------GYSVSTLESQLATADIFISATGNKDIITARHMSQMKNNAIVGNIGH............................................................................................... 342
10 -8.760IDP91791 gene: vanH; vancomycin resistance protein [Enterococcus faecium] AAA24789 [Enterococcus faecium]  ali follow..  13  140........................RGKVLSDMTVGVVGTGQIGKAVIERLRGFGCKVLAYSRSRSIEVNYVPFD--------------------ELLQNSDIVTLHVPLN---DTHYIISHEQIQRMKGAFLINTGRGPLVDTYEKALENGKL----------GGAALDVLEGEEEFFYSDCTQKPIDNQFLLKLQRMPNVIIT............................. 290
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.