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Query: PF00834.19; RPE_SYNY3/6-205; Ribulose-phosphate 3 epimerase family, from PfamA32U

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFLast
1 -96.800IDP06273 ribulose-phosphate 3-epimerase [Streptococcus pneumoniae TIGR4] NP_346410 [Streptococcus pneumoniae TIGR4]  ali follow..  48  5KIAPSILAADYANFEREIKRLEATGAEYAHIDIMDSHFVPQISFGAGVVESLRPHSKMVFDCHLMVSNPEHHLEDFARAGADIISIHVEATP--HIHGALQKIRSLGVKPSVVINPGTSVEAIKHVLHLVDQVLVMTVNPGFGGQAFLPETMDKVRELVALREEKGLNFEIEVDGGIDDQTIAQAKEAGATVFVAGSYVF 202
2 -94.900IDP90710 gene: rep; ribulose-phosphate 3-epimerase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0451 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  47  2YVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLTFGPCVIEKISTISKLPLDVHLMVKDVSKFVDLFISLKPKFISFHMESEV--HPIRLCEYIRSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLIHEKIKELRQMIDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIF 199
3 -91.400IDP06180 gene: rpe; ribulose-phosphate 3-epimerase [Helicobacter pylori J99] NP_224157 [Helicobacter pylori J99]  ali follow..  44  3.VAPSLLSADFMHLAKEIESVS--NADFLHVDVMDGHYVPNLTMGPVILENVTQMSQVPLDVHLMVENASFFVELFAPLNPQIISIHAENEK--HPHRVLQLIKSSGITPGIVLNPHTHEESIKYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIKRYNPSCLLEVDGGVNDKNIFELQQAGVDVVVSGSYIF 197
4 -91.200IDP02542 gene: rpe; D-ribulose-phosphate 3-epimerase [Francisella tularensis subsp. tularensis SCHU S4] FTT0789 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  47  5QINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASE--HIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIF 203
5 -90.800IDP01987 gene: rpe; ribulose-phosphate 3-epimerase [Yersinia pestis CO92] YPO0155 [Yersinia pestis CO92]  ali follow..  54  5LIAPSILSADFARLGEDTAKVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDYITAPIDVHLMVKPVDRIVPDFAKAGATYITFHPEASE--HVDRTLQLIKESGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPETLNKLRQVRKLIDDSGYDIRLEVDGGVKVENIRQIAAAGADMFVAGSAIF 203
6 -82.500IDP92047 ribulose-phosphate 3-epimerase [Toxoplasma gondii ME49] TGME49_047670 [Toxoplasma gondii ME49]  ali follow..  41  8IICPSVLASDLSSLASDAKRMVDAGCDWLHLDIMDGHFVPNISFGPGVVKALRGHKSAFFDVHLMVSEPEKWIQPFADAGANSITFHWESVGGDRAAELAKRIQARGIKAGLAIKPATKFEDLGEALDNFDMLLVMTVEPGFGGQKFMADMLQKVRTARSLFP----KLNIQVDGGLDGETVKPAASAGANVIVAGTSMF 208
7 -32.300IDP01486 gene: ulaD; 3-keto-L-gulonate-6-phosphate decarboxylase VCA0242 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  7.....QIALDQTNLTDAVAVASNVAS---YVDVIEVGTILAFAEGMKAVSTLRHNPNHILVCDMKTTDGAILSRMAFEAGADWITVSAAAHIAT-IAACKKVADELNGEIQIEIYGNWTMQDAKAWVDL-QAIYHRSRDAELAGIGWTTDDLDKMRQLS------ALGIELSITGGIVPEDIYLFEGIKTKTFIAGRALA 195
8 -12.600IDP01861 gene: nanE; N-acetylmannosamine-6-phosphate 2-epimerase [Salmonella typhimurium LT2] STM3337 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  19  35.............VAAMALAAEQAGAVAVRIEGIDNLRMTRSLVSVPIIGIIKRDLD---ESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPVVEALLARIHHHHLLAMADCSSVDDGLACQRL---ADII-------GTTMSGYTTPDTPEEPDLPLVKALHDAGCRVIAEGRYSPALAAEAIRYGAWAVTVGSAI. 210
9 -11.800IDP04524 N-acetylmannosamine-6-phosphate 2-epimerase [Salmonella typhimurium LT2] STM1129_1_226 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  19  35.............VAAMAQAAASAGAVAVRIEGIENLRTVRPHLSVPIIGIIKRDLT---GSPVRITPYLQDVDALAQAGADIIAFDASFRSRPVIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---IEFI-------GTTLSGYTGPITPVEPDLAMVTQLSHAGCRVIAEGRYTPALAANAIEHGAWAVTVGSAI. 210
10 -11.700IDP01920 gene: trpA; tryptophan synthase, alpha subunit [Coxiella burnetii RSA 493] CBU_1156 [Coxiella burnetii RSA 493]  ali follow..  16  24.........GLERSLESLLALAKGGVNILEVGVADGPVIQTLHDVLTLITSFRQHSEIPI-FNPLLAAGDKIYQQMKSAGVDGCLV----LPVEEAAPHLTACKTAKIAPILLISPSTTQERLKKINEHGEGMLYYVCRPGTTGATLPENFPAKMNQIKSMT-----SLPIVTGFGIANRKMAAQALQYADGFVIGSLF. 229
11 -11.100IDP90540 gene: trpA; tryptophan synthase subunit alpha [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0349 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  23.........NLQTSEAFLQRLDQSPIDILELGVADGEIIADLDQGVDIHSVFELLARIKTKKALVFMV-EKFVKKAKSLGICALIV--PELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLLASIGITGSVEEAILQDKVKEIRSFT-----NLPIFVGFGIQNNQDVKRMRKVADGVIVGTSI. 227
12 -10.900IDP02320 gene: trpA; tryptophan synthase subunit alpha [Bacillus anthracis str. `Ames Ancestor`] GBAA1254 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  16  27.........GLEILKERIRFLDEAGASIVEIGIADGPTIQTVKGIFQALIEVRKEVQIPFVL-VLAFGKERFIENCMEAGVDGIIV----LPYEEQDIIAPLLREANIALIPLVTVTSPIERIKKITSESEGFVYAVTVAGVTGQNFKDEIHSYLEKVKSHT-----HLPVVAGFGISTKEHVEEMVTICDGVVVGSKV. 233
13 -10.700IDP01917 gene: hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1429 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  34...............AQAIIFEKFGAKRLHIVDLDGAV-AGESLNLSVIERICKAVRIPVQVGGGIRSLVA-VEKLFSVGVDKVILGTAALYDKTFLEEAVLLYKEKIIVGIDAKNGFVATRGWLDVSEISYIDLAKQMEKIGVQTIVFTDISKIEQLELLQKS--VAIRLIASGGVSIQDVKKLNDMNIYGVIIGKALY 223
14 -10.600IDP06552 tryptophan synthase subunit alpha [Mycobacterium tuberculosis H37Rv] NP_216129 [Mycobacterium tuberculosis H37Rv]  ali follow..  16  37.........DVPASVAAMTALVESGCDIIEVGVMDGPTIARAT--RDTLAAVEAISIAGGRAVVMTYGVDAFARDLAAAGGLGLIT----LIPDEAQQWLAASEEHRLDRIFLVAPSSTPERLAATVEASRGFVYAASTMGVTGDAVSQAAPELVGRVKAVS-----DIPVGVGLGVRSRAQAAQIAQYADGVIVGSAL. 242
15 -10.500IDP90546 gene: pyrF; orotidine 5`-phosphate decarboxylase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0381c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  11  4.....CVALDLSTKEECLQLAKELKNLDVGLRAY-------LRDGFKFIEELKKVDDFKIFLDLKFHD-ADACEEVSKLGVDMINIHASAGKIQEVMTRLSKFSKRPLVLAVSALTSFDEENFFSIYRQ-EAVINFSKISYENGLDGMVCSVFESKKIKEHTSSN----FLTLTPGIRPFNLAMARENLSDYIVVGRPIY 210
16 -10.400IDP04160 tryptophan synthase, alpha subunit [Vibrio cholerae O1 biovar El Tor str. N16961] VC1169 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  29.........NPEQSLAIMQTLIDAGADALELGMADGPTIQGAN--DICFELIAQIRARNPETPIGLLM-DDFYQRCQKAGVDSVLI--ADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGVTGTKANMPVHALLERLQQFD-----APPALLGFGISPAQVKQAIEAGAAGAISGSAV. 237
17 -10.300IDP01866 gene: trpA; tryptophan synthase subunit alpha [Francisella tularensis subsp. tularensis SCHU S4] FTT1772c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  16  30.........NKALSFEIIDTLVSSGADALELGIADGPTIQEAN--KDCFDILTKIRAKYPHIPIGLLL-ENFYQKCLDAGVDSILI--ADVPAHESKEFRDIAKKVGIAQIFIAPPDASESTLKQISELGSGYTYLLSRVGVTGTAANMPVEDVLTKLREYN-----APKPVLGFGISPEQVQQAIKAGAAGAISGSAT. 238
18 -9.930IDP04319 gene: hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Yersinia pestis CO92] YPO1544 [Yersinia pestis CO92]  ali follow..  12  33...............PRLQDYQQQGAQVLHLVDLTGAKDPA-ARQIPLLRELLAGVDVPVQVGGGIRNEQD-VVALLEAGAARVVVGSTAVKQPEVQQWFERYGAEAIVLALDVRINEAGCKHVAINSDATLEQIVEQYLPYGLKHVLCTDISR--ELYQEVCQRYPQVAFQASGGICLDDIARLRGSGVQGVIVGRALL 229
19 -9.790IDP00985 gene: hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase STM2076 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  33...............PRLQDYAAQGAGVLHLVDLTGAKDPA-KRQIPLIKTLVAGVNVPVQVGGGVRTEED-VAALLKAGVARVVIGSTAVKSPDVKGWFERFGAQALVLALDVRIDEHGTKQVAV-SGVSLEQLVETYLPVGLKHVLCTDISR--SLYEEVCARYPQIAFQSSGGIDIDDIAALRGTGVRGVIVGRALL 229
20 -9.730IDP90509 gene: trpF; N-(5`phosphoribosyl)anthranilate isomerase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0347 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  14  13...............KNAKDLAFLNIDFFGLIFAKSPRRVSLEQARNLSAIFHEKDKKVVGVFV--ENLEQILRCIKEAKLDGIQIYRTITK-----EEFEILKVQNVFVWQVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTK------------DFILAGGIGLDNVHKAVKTGAKILDLNSKL. 178
21 -9.480IDP01028 gene: pyrF; orotidine 5`-phosphate decarboxylase STM1707 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  18.....VVALDYHERDKALAFVDKIDPRDVGKEMF-------TLFGPQLVRDLQQRGDVFLDLKFIPNTTARAVAAAADLGVWMVNVHASGDALAPFSKDAPLLIAVTVLTSMETSDLHDLGVTLSPAEHAERLARLTQQCGLDGVVCSAQEAVRFKQAFG-------AAFKLVTPGIRPATPEQALSAGVDYMVIGRPVT 225
22 -9.470IDP04421 gene: pyrF; orotidine 5`-phosphate decarboxylase [Bacillus anthracis str. `Ames Ancestor`] GBAA4022 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  6.....IVALDFPGKQDVEQFLRHFEGEELFVKVGMELFY---KEGPAIITYLKEKGKIFLDLKLIPNTVKSAMRSLASLDVDMVNVHAIEGLEEGKQEGKERPICIAVTQLTSTSETMMKKEIGIEKTLEEAVAHYAKLTKESGLDGVVCSTLEVPKLREVCGSE-----VTVTPGIRLATPKRARELGSSYIVVGRSIT 217
23 -9.390IDP06331 inosine 5-monophosphate dehydrogenase [Listeria monocytogenes EGD-e] NP_463665 [Listeria monocytogenes EGD-e]  ali follow..  17  174.....VTANKSTTLKEANNIIWDNKLNALPLVDDNEHLVHMVFRKDYDSNKENKLELLDSSKRYVVRDYEERVPALVEAGADILCIDSSEGYSEWQKRTLDYVRGKGDTVKVGAGNVVDRDGFRYLAEAGADFVKVGVGGG--GRGQATALIDVAKARDEYFEETGVYIPICSDGGIYDYHMTLALAMGADFIMLGRYF. 384
24 -9.210IDP90842 gene: nadC; quinolinate phosphoribosyltransferase [Shigella flexneri 2a str. 2457T] S0108 [Shigella flexneri 2a str. 2457T]  ali follow..  11  88.IIWHVDDGDVINANQPLFELEGPSRVLLTGERTALNFVQTLSKVRHYVELLEGTNTQLLDTRKTLPGLRSALKYAVLCGGDAFLIHIIASGS--VRQAVEKASWLHPDAPVEVEVENLEELDEALKAGADIIMLDNFET---------------EQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVDFISVGA... 282
25 -9.180IDP05336 gene: ruvA; hypothetical protein Cj0794 [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0799c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  17  8...................IITKKEPTFIIVKCASG----GIFISLFCSAKIQTQEKHEFFITQIIKEDSNKFYGFLD------------KDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKALSLGDESVLKKV-PGIGAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKIISVLVS............ 165
26 -9.170IDP00555 gene: nadC; quinolinate phosphoribosyltransferase YPO3424 [Yersinia pestis CO92]  ali follow..  11  94........GDKLTANQTLCHLTGPARILLTGERTALNFLQTLTEVSRYVVQLAGLKTQLLDTRKTLPGLRTALKYAVLCGGDAFLIHIIAAGS--IKEAVAKAFWIHADVPIEVEVESLDELQQALEAGADIVML---------DNFTIPMMRDAVKMRDDHAKTQGSAQLEVSGNVTLETLRSYAETGIDFISVGA... 287
27 -9.130IDP04102 gene: pyrF; orotidine 5`-phosphate decarboxylase [Yersinia pestis CO92] YPO2227 [Yersinia pestis CO92]  ali follow..  13  18.....VVALDYANKDAALAFADQVSPQDVGKEMF-------TLYGPELIRDLHQRGDVFLDLKFIPNTTARAVAAAAELGVWMVNVHA-SGGARMMSAAKEALLPYGAQAPLLIAVTVLTSMDGEDLRDIEQAERLAKLTWDCGLDGVVCSAHEAVRLKQVCGED-----SLVTPGIRPQTPEQAVAVGVDYMVIGRPIT 225
28 -9.090IDP90547 gene: hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1601 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  35...............KKFKEYEKAGAKELHLVDLTGAKDPS-KRQFALIEKLAKEVSVNLQVGGGIRSKEE-VKALLDCGVKRVVIGSMAIKDATCLEILKEFGSEAIVLALDTILKEDYVVAVN--SDKKLMEVLDFYSNKGLKHILCTDISK--RLYKLIHEIFPNICIQASGGVASLKDLENLKGICSGVIVGKALL 228
29 -9.010IDP06341 gene: guaB; inosine-5`-monophosphate dehydrogenase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] YP_095750 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali follow..  18  234........................................................................VAALVESGVDVIVVDTAHGHSQGVLNRVKWIKKNYPDVQVIGGNIATAAAARDLYEAGADAVKVGIGPG---RIVTGVGIPQISAIANVAQELKGIIPVIADGGIFSGDVCKALAAGADTVMLGSMF. 363
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.