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Query: PF01810.18; RHTC_ECOLI/13-206; LysE type translocator, from PfamA32U

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst IVALMSPGPDFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGIALLGLHLIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKEAVSAPAPQVELAKSGRSFLKGLLTNLANPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVETLAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISRLast
1 -8.890IDP90775 gene: dipZ; thiol:disulfide interchange protein precursor [Yersinia pestis CO92] YPO0345 [Yersinia pestis CO92]  ali follow..  11  202IGIAFTP-P-SAVILGREKPHSQRRILILAVVYVQGMAL--TYTLLGLVVAAAGLQFQAALVLIGLSVLFVLLALSMFLPSSLQTRLTQWSNSQRGGSLAGVFAMGALAGLISPCTTAPLSAILLYIAQSGN------MLAGGGTLYLYALGMGIPLVVVTLFGNKLIPRSGPWMQYVFGFVILALPVFLL... 404
2 -8.830IDP92691 hypothetical protein SAUSA300_0346 [Staphylococcus aureus subsp. aureus USA300_FPR3757] YP_493060 [Staphylococcus aureus subsp. aureus USA300_FPR3757]  ali follow..  10  315MIIFLREGLEVLLIVMTLTTMTRNVK-SVIGGAIAGLVLSIILAIT-LGNSGILRESMEAGLGIVAVILMFIVGVDMIKNMYANAISNGNLVLLATIGLISVLREGV-------EVIIFYMGMIGELATKDFIIGIALAIVILIIFALLFRFIVKLIPI-------------FYIFRVLSIFIFIMGFKML... 505
3 -7.840IDP00847 gene: trpG; anthranilate synthase, glutamine amidotransferase, component II SACOL1404 [Staphylococcus aureus subsp. aureus COL]  ali follow..  13  43..VIISPGPGHPLDDQQLMKIISTYQHKPILGICLGA--QALTCYYGGEVIKGDKVMVDTLKVISHHQHLLYQDIPEQFSIMRYHSLISNPDNFPEELKITGRTKDCIQSFEHKERPHYGIQYHPESFATDYG............................................................. 174
4 -6.300IDP92760 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG36632 [Vibrio cholerae O1 biovar El Tor]  ali follow..  10  3LLDEFKP---VLKIKRQCIGNCSMYRVLLAVGYTQQELIYQPLISL--SFLDGKLEIFNALLQQVGFDAMRYT-LQQWFAGLENDGRYMDYSLMD--SSWENVKKSVIPLVLNPEVKFEYV......................................................................... 130
5 -6.210IDP95019 Set165a_006 [Vibrio cholerae O1 biovar El Tor]  ali follow..  11  3LLDEFKP---VLKIKRQCIGNCSMYRVLLAVGYTKEELIHQPLISL--SFLDGKLEIFNALLQQVGFDAMRYT-LQQWFAGLEKDGRYMDYSLMD--SSWENVKKSVIPLVLNPEVKFEYV......................................................................... 130
6 -6.010IDP01719 ribose-5-phosphate isomerase B [Bacillus anthracis str. `Ames Ancestor`] GBAA5560 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  17  44........PDFAFPAAEMVANGEVDRGILVCGTGIGMSI-AANKVNGIRCALVHDTFSARATREHNDTNMLAMGERVI.................................................................................................................... 112
7 -5.940IDP00349 gene: trpG; hypothetical protein lmo1632 lmo1632 [Listeria monocytogenes EGD-e]  ali follow..  12  45..IVLSPGPGKPSDAGLLEE-AKFAKEKPLLGICLGHQAIGEVFGGEVKRAAKIRHGKVSTMRQTAGAIFANLPEEMPVMRYHSLIVDKNTLPDVLEVLAIATDDSEVMAMKVKDYPVYGLQFHPESIGTNDG............................................................. 176
8 -5.900IDP01619 gene: pabA; para-aminobenzoate synthase glutamine amidotransferase, component II [Coxiella burnetii RSA 493] CBU_1871 [Coxiella burnetii RSA 493]  ali follow..  10  47..IVISPGPGRPEEAGITLPMIKASGKIPLLGICLGH--QAIAQAFGAKIVLAEKIMHGKTSIIHHSGKGVFNGINDSFVATRYHSLIIERESLPAEFEITAWTNQEIMGIRHAHHSLEGVQFHPESVLTQHG............................................................. 178
9 -5.720IDP06073 gene: rpi; ribose-5-phosphate isomerase B [Helicobacter pylori J99] NP_223239 [Helicobacter pylori J99]  ali follow..  11  48........PDYAKLVCQKVLENAQSYGILVCATGIGMSM-GANRFKGIRAALCLDAYMAKMTRLHNNANVLCLGEKIS.................................................................................................................... 116
10 -5.720IDP91698 gene: NPM1; nucleophosmin isoform 1 [Homo sapiens] NP_002511 [Homo sapiens]  ali follow..  11  42...........LSLRTVSLGAGAKDELHIVIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHIS--GQHLVAVEEDAESEDEEEEDVKLLSISG............................................................................................. 140
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;