current user: public

If you have questions about the server, please let us know.

Query: PF02691.15; VACA3_HELPX/43-1023; Vacuolating cyotoxin, from PfamA32U

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670    .  680    .  690    .  700    .  710    .  720    .  730    .  740    .  750    .  760    .  770    .  780    .  790    .  800    .  810    .  820    .  830    .  840    .  850    .  860    .  870    .  880    .  890    .  900    .  910    .  920    .  930    .  940    .  950    .  960    .  970    .  980
# Score Template Links and tools%idFirst AFFTTVIIPAIVGGIATGAAVGTVSGLLSWGLKQAEQANKAPDKPDKVWRIQAGRGFDNFPHKQYDLYKSLLSSKIDGGWDWGNAARHYWVKDGQWNKLEVDMQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFNGNSFTSFKDGANRTTRVNFDAKNILIDNFVEINNRVGSGAGRKASSTVLTLKSSEKITSRENAEISLYDGATLNLVSSSNQSVDLYGKVWMGRLQYVGAYLAPSYSTIDTSKVQGEMNFRHLAVGDQNAAQAGIIANKKTNIGTLDLWQSAGLSIITPPEGGYESKTKDNPQNNPKNDAQKTEIQPTQVIDGPFAGGKDTVVNIFHLNTKADGTLRAGGFKASLSTNAAHLHIGEGGVNLSNQASGRTLLVENLTGNITVEGTLRVNNQVGGAAIAGSSANFEFKAGEDTNNATATFNNDIHLGKAVNLRVDAHTANFNGNIYLGKSTNLRVNGHTAHFKNIDATKSDNGLNTSTLDFSGVTDKVNINKLTTAATNVNIKNFDIKELVVTTRVQSFGQYTIFGENIGDKSRIGVVSLQTGYSPAYSGGVTFKGGKKLVIDEIYHAPWNYFDARNVTDVEINKRILFGAPGNIAGKTGLMFNNLTLNSNASMDYGKDLDLTIQGHFTNNQGTMNLFVQDGRVATLNAGHQASMIFNNLVDSTTGFYKPLIKINNAQNLTKNKEHVLVKARNIDYNLVGVQGASYDNISASNTNLQEQFKERLALYNNNNRMDTCVVRKDNLNDIKACGMAIGNQSMVNNPENYKYLEGKAWKNTGINKTANNTTIAVNLGNNSTPTNSTTDTTNLPTNTTNNARFASYALIKNAPFAHSATPNLVAINQHDFGTIESVFELANRSSDIDTLYANSGAQGRDLLQTLLIDSHDAGYARTMIDATSANEITQQLNAATTTLNNIASLEHKTSGLQTLSLSNAMILNSRLVNLSRKHTNHIDSFAKRLQALKDQRFALast
1 -9.360CPX_91702_91677 Complex of EZRI_HUMAN with M1_I34A1 [Undefined organism]  ali follow..  14  657.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SERGLQRRRFVQNALNGNGDPNNMDKAVKLYRKLKREITFHGAKEISLSYSAGALASCMGL-IYNRMGAVTTEVAFGLVCATCEQIADSQHR-----------SHRQMVTTTNPLIRHENRMVLASTTA-KAMEQMASSEQAAEAMEVASQARQMVQAMRTIGTSSAGLKN--DLLENLQAQKRQRF. 838
2 -7.290IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames]  ali follow..  12  224............................................................................................................................................................................................................................................................................................................................................................................................................................................................................YMENLERITIQGSDVR--NIAPISQLKRLKVVDLSFNKIENVEPLVNLE-KLDILELQNNRIADVTPLSQLKKVRTINLSGNKISDIKPLYNVSLYVSNNKITD--EQLNKLGTLGVGSNGLVNIEPIQMSGIVELNLEKNDIKDIT-SLSKLTGLQSLNLEENYVSDVSLSNLINLYELKLATNEIRDIRPIQELGKRIKIDAQRQKVFLDEAYMNEEVKIPVYDVNGTALQNIEWKSEGGSITNGVIKWNSLGEKMYEFKMDAGESKIRFQGRVIQNIVEKREESSNVIMKLRQYMNKHNFERKNVNTPITKEDLLTVKALKITDGKKEGITDFSGLEFMT-------EELTLQNVNMKNAEFISSLRNLKSVDLSYNQIEDIKPLHSLEDLEKLNVSGIKNVPELFKMQKL--KTLDLSNNKLDNAALDGIHQLENLVNNNEINNLDEISKVSNKLEMMSNKVRDISPLASLKN-LQWLNLSQDISTLSSMLDLLSLKLAGNERPVIQLAQWI..... 753
3 -7.240IDP91074 ABC transporter, ATP-binding protein [Mycobacterium smegmatis str. MC2 155] MSMEG_5659 [Mycobacterium smegmatis str. MC2 155]  ali follow..  13  378........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YAPGRPVLPDLTLTVPAGQTVALVGTTGAGKTIARFYDPTSGTVTLDGVDLRDLSQSELRRHVVMVTQENFMFEGTVADNIRFGRPDATDAQVRAAAEAVGADRFIA--TLPEGYGTDVAKRGGRL---------QRQLIAFARAFLADPAVDEATSSLDIPSERMVQRA-LADRTALVIAHRLST-VQIADRVLVLEHGRIIEDGSP-ADLIGRTDGAYA 599
4 -7.200IDP02076 putative methyl-accepting chemotaxis protein [Salmonella typhimurium LT2] STM3216 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  276.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAQIVAGNQDLAARTE---------------EQASSVEETAASMEQITATVKNTADHTSEATKLSAG---AASVVKNNGEMMNQVTQKMRVINDTAN-RMSDIINIIDSIAFQTNILALNAA----------VEAARAGFARQLASASSASEIMHLVEKASALINGMVDNVEEMDGQASREQTDGISQINSAIAATQQNSCLVEESVAAAASLNEQ... 500
5 -6.970CPX_91712_91677 Complex of HSP7C_HUMAN with M1_I34A1 [Undefined organism]  ali follow..  15  718.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ERGLQRRRFVQNALNGNGDPNNMDKAVKL--YRKLKREITFHGAKEISLSYSAGALA-------GLIYNRM----GAVTTEVAFGLVCATCEQI--RQMV--TTTNPLIRHENRASTTMEQMASSEQAAEAMEVASQARQMVQAMRTIGTHPSSS--KNDLLENLQAYQKQRF. 898
6 -6.950IDP02460 gene: cheD; methyl-accepting chemotaxis protein [Yersinia pestis CO92] YPO1675 [Yersinia pestis CO92]  ali follow..  13  280.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GASEIAVGNNDLSARTE---------------QQAASLEETAASMEQLTATVKQNAENARQASQLALS---ASETAQKGGKVVADVVQTMHEIAGSSQ-KIADITSVIDGIAFQTNILALNAA----------VEAARAGFARNLASAQAAKEISVLVESAGETMGDIVAVTRVTDIMGEIASASDIDQIGQAVRVTQQNASLVEESASAAASLEEQ... 504
7 -6.930IDP01940 gene: trg; methyl-accepting chemotaxis protein III [Salmonella typhimurium LT2] STM1626 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  292.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTSEITAGNTDLSSRTE---------------QQAAAIEQTAASMEQLTATVKQNADNAHHASKLAED---ASGKASRGGQMVSGVVQTMGNISTSSK-KISEITAVINSIAFQTNILALNAA----------VEAARAGFARTLASAQAAKEISEEVIAAGSTMNEIVAVKRVTDIMLDIAAASDIVQVSQAIRVTQQNASLVEEASAAARSLEEQ... 516
8 -6.910IDP91071 putative ABC transporter, ATP-binding protein [Neisseria gonorrhoeae FA 1090] NGO2165 [Neisseria gonorrhoeae FA 1090]  ali follow..  10  392..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ALDNFNLDIRQGERVALVGRSGSGKSLPRFVEPSAGNICIDGIDIADIKLDCLRAQFALVSQDVFLFDDTLFENVRYSRPDAGEAEVLSALQAANLQSLID--ASPLGLHQPIGSNGSNLSG-------QRQRVAIARAILEATSANESERLVQQALERL-----MENRTGIIVAHRLTT-VESADRIIVMDGGKIIEQGTHDQLMFQLRNISGK 614
9 -6.870IDP91080 gene: msbA; lipid export ABC transport protein Cj0803 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  355..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VLKGVNFDFVKGQMLALVGTSGGGKSLMYFYEKQKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVI----QALKLANAYEFVKEMGGIWAEVKEHGKNLSG-------QKQRIAIARALYEATSANESEKAIVKTIENL-----KQDRLILVVAHRLST-IENADKIVVLDKGKVLAIGKDEELLQT....... 562
10 -6.860IDP01089 gene: tsr; methyl-accepting chemotaxis protein I STM4533 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  280.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GASEIAMGNNDLSSRTE---------------QQAASLEETAASMEQLTATVKQNAENARQASHLALS---ASETAQKGGKVVDNVVQTMRDIASSSQ-KIADIISVIDGIAFQTNILALNAA----------VEAARAGFARNLASAQAAREISTLVESAGETMDEIVAVTRVTDIMGEIASASDIDQVGLAVRVTQQNASLVEESAAAAAALEEQ... 504

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 2 2 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A. The challenge of protein structure determination--lessons from structuralgenomics. Protein Sci. 2007 Nov;16(11):2472-82.