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Query: PF03224.14; VATH_ORYSJ/2-323; V-ATPase subunit H, from PfamA32U

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DHAELTTEQVLKRDIPWESYMANKLISGTCLQLLRRYDHKPESQRGPLLDEDGPSYVRVFLNILRNISKEDTVEYVLALIDEMLAVNPKRAALFYDNSLSGEDIYDPFLRLLLKGNWFVQEKSCKILTQIISARPKMQNGIVPNGEASNSKSKLTSTQDVLRGLVDWLCSQLRNPTHPNCSVPTAMHCLATLLREQYVRALFVQADGVKLLIPLISPASTQQSIQLLYETCLCIWLLSFYDAAVDYLSTTRVMPRLVEVVKGSTKEKVVRVVIMSIRNLLAKGAFAAQMIDLGLPHIVQNLKAQAWTDEDLLDALNQLEIGLLast
1 -18.600IDP91695 gene: KPNA1; importin subunit alpha-1 [Homo sapiens] NP_002255 [Homo sapiens]  ali follow..  10  185.........................VQEQAVWALGNIAGDSTMCRDYVLDCN---ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-----SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI-------------------AGVCRRLVELL--MHNDYKVVSPALRAVGNIVTDDIQTQVILNCSALQSLLHLL----SSPKESIKKEACWTISNIT-NRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSSAEQIKYLVELGCIKPLCDLLTV--MDSKIVQVALNGLENI 450
2 -10.000IDP06019 phospholipase A2 activating protein, putative [Toxoplasma gondii ME49] EEB01121 [Toxoplasma gondii ME49]  ali follow..  8  607...WASYGGGVSKVAPLMQVFTFAKGNFEGAKKIMEFDAQFPEDSPAHLTALEKQYLLDALEKIQSPSFMK--------------------------KEFRACELDVIFEKLAVWPSSKAVPVMDVWRALALHPQ----------YHAVHRKSGDHGWMTVVVALRHLKEACASQADETPLILCCLRFLANLMDLTTNRTVMLRH--LESLASDRVLTNPNKNVRLTAASLLANFAVAFATKEETE-GRIKVLKLLRGLMEREGDADVFYRCLLAVLTILATPPQRGACQEIDMADVLPPLNQNIPAEGRIGDAAQDILLLL 898
3 -8.600IDP90382 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_350 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  8  50..........................ATYQQHDFSVLRVIAESYLQQSFLSEDTYIRKSAIIGAGLSGSSEALELLSEAIET--DLYEQLLILNAATSQLSKTSDKLLFKGLTASHPVIRLEAAYRLACMKNSKVSDYLYSFIYKLPEEIQNLAATIFLQLEEADAYIHHLLSSPNNLTRNYVAFLPTLRSLLTSASPLDQEGALYALGKLYPRIKALSSRSNPEVVLAAAQTLLFLE----------KEEEALPILTNLCQ-QKLLRALYTARFLSQEKGEELLLPIFYNAT-LNTALALVHQGCTDPQVLHYLTEILES. 353
4 -7.880IDP06032 beta-adaptin-like protein, putative [Toxoplasma gondii ME49] EEB01577 [Toxoplasma gondii ME49]  ali follow..  9  144CMLEYIEPAARKGASDPSPYVRRAAV----MGMLKVCKLLQEATDEESSLQRIDEIRQRLHEALFD-DDPQVTINAICALNELEAETGGLLNLVASYQPETEEVMNILDDKLKSSSAAVVLGCANCFLELTRGNAELRKQVYCRLKPPLLTLATTGYPEIAHTILRHILLIVQTYTDPSYLKATKLQTLAAIATENN----------CVDMIAEIREYVCDADADIARQSLAALGVIACRIPSAAD-----VVTLLLSFVEMELADFLASAAFVILRDILRKYTKMISRLVEAIRIYALRL-----SDGEGVAAVVWM.... 487
5 -7.540IDP90389 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_384 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  8  88..IRHSSLTVRVITI-----LAVGMARDYRLIVLQALSDDSDTVREIAVQVGSSCLLRAVGDLAKNDSSIQVRITAYRAAAVL----------------EIQDLVPHLRVVVQNTQLDGTERREAWRSLCVLTRPHSGVLTGIDQALMTCEMLKEYPEKCTEEQIRTLLA-----ADHPEVQVATLQIILRGGRVFRSSSI---------MESVQKLACNSLSARVQMQAAAIL----------YLEGDPFGEDKLTEGLSATSSI-LCEAASEAVCSLGIHGVHLAGRFLSK-VNLAFALLVSREKVEEAGDVVASFIHR. 372
6 -6.660IDP92606 gamma-adaptin, putative [Toxoplasma gondii ME49] TGME49_113670 [Toxoplasma gondii ME49]  ali follow..  10  73.....ASPRFAEKRV---GYLGLSCLLDEQSEVLMLATNSIKND----LQHPNQYVNGLALTALGNIGTGEMCGAIMTQVEDLLRCSNPFIRVVKRVGDCEEKLLACLPALLADRNHGVLISACALITALAERDPSLVSTMRTHIPTLVKSTNTEGAKNVGNSVLYECVRTIMTIEDDPGLRVLGVNILGRFLSSRELNVKYVALGTLQQVVRVLLDCLKDQDLSLRRRAVEVLFCLI-TDDNVRGL-----VKELLNFLLMLNDAEFKQFVVNKIAVAASRHAPSTR------IDTLLKLMT-DAVDDAITYSFVDLVVS. 448
7 -6.400IDP95477 ELMO1 [Homo sapiens] AAL14466 [Homo sapiens]  ali follow..  12  93..............................................................................................................................................................................QSSSMDAKLEALKDLASLSRDVTFAQEFINLDGISLLTQMVESGTERYQKDMLSFTLTAFVELMDHGIVSWDTFSVAFIKKIASFVNKSAIDSILQRSLAILESMVLNSHDLYQKVAQEI--TIGQLIPHQGSDQEIQTYTIAVINAL 250
8 -6.360IDP92584 adaptin N terminal region domain-containing protein [Toxoplasma gondii ME49] TGME49_044290 [Toxoplasma gondii ME49]  ali follow..  10  80..MTNQTNNIKAKRL---GYLACNLFLSEDNELMLLLINTIQKD----LASPNILNVQSALHCVARLLTPEMLPALLPSLSSLLQHSHAAVRRKAVMAVHKEGLREKMRRALCDSDPSVMAVSLHVIHRLAAKNVAAWRDLVSSLVSILKQIIDRKLPKDYE-QIKILSLLSTLAAGDQRASEEVYELLQEVMRRADAAGVNVAYA-LDIAGCSISRFISAENNNLRYVGVTGLAAVVQVSPAYATQHQLVVVDCL-----EDSDDTLKRKTLDLLVKITNPVNVAVVVLRANLIQKIIMLAERYSPDPR----LETILCVL 459
9 -6.130IDP92583 beta adaptin protein, putative [Toxoplasma gondii ME49] TGME49_040870 [Toxoplasma gondii ME49]  ali follow..  10  60......TTNMELKKL---VYLYVINYAKAQPELAILAINTFRKD----SLDPNPLIRALAVRTMGCIRLEEITEYLVEPLRRSCKDPDPYVRKTAAICVGEEGFIEELTTMLSDSNPVVVANAVAALSEISENSGRNYMKNILNAKESNVNKLLAALNECTEGQVFILDALAQFEPETPRAAESVLDRVTARLSHANSAVVLSAIKVVMKLLCPPLVTLLSAEPEIQYVALRNIELIVQKRPSIPVYVKIEKLDILVRLVSEKNVDQV-------LSELKEYATEVDVDFVRKAVRCIGRCAIKLDCAAE----VAVLLDLI 401
10 -5.890IDP06034 adaptin, putative [Toxoplasma gondii ME49] EEA97063 [Toxoplasma gondii ME49]  ali follow..  11  136......RQLSGSGAE---GRNLADEKQKQQQALSLLTTNLFKKD----FNSKETHETSLALSTLAVMSTPEIAAALLPDVLLLLASSRSIL---------RKKAAVCASRFLIQVPALLPSSFPKLRQQLMSEEETPVVTSLCSALLQLIAERPQQYLSLVPPLFHLLCASSSNAPFEPRLPLKLLRPLRTLLEQSRAKSVEVEILRLSLLHFPFEEAAAKARRTLANSEVAGEEPPREDGCELDAFLRS-CLRRIHALLTS-ADRNLRCVGVDILARLFAEKRDMAA--VAACIPEFRKFVLQAAEECDPTESFTQIAEQL 468
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.