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Query: PF05721.13; Q92PC6_RHIME/55-292; Phytanoyl-CoA dioxygenase (PhyH), from PfamA32U

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ARLAGDCATQDGRRSVLAEICEALATGPGVAVFKRAFTDTRVIDEASGIFNEIIEEQHRTNSGGGDHFAKPGANDRIWNSLEKHCLKNPENFAAYYGNAIIALVSEAWLGPNYQMTAQVNRVNPGGASQSPHRDYHLGFQTSAVIEQYPAHVHRLSPVLTLQGAVAHCDMPVESGPTLFLPYSQTYLPGYLALKRPEFRTYFEENHVQLPLEKGDVVFFNPALFHAAGSNRSAGIKRVLast
1 -10.000IDP01434 PvcB protein VC1944 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  8  17GVIVEPKHAPIHVNELDIDELRELFLREQLVLLRGF-HSEQFADYCERW-----------------------------------------------------EVSVWPFGRVLDLVQKEDPGD-DSSYMPMHWDGMY-----------------RPQVPEYQIFQCVKPLPGHGGRTTFSHTMLALQHAPQPDLELRRALYDPRNFYAHEWQTGDIVITDNSLLHGREAFTSHTPRHI 263
2 -9.790IDP91768 gene: ycfD; conserved protein [Escherichia coli str. K-12 substr. MG1655] b1128 [Escherichia coli str. K-12 substr. MG1655]  ali follow..  11  8...............NWPDFLERHWQKRPVVLFIDPISPDELAGLAMES------DSRLVSHQDGKWQVSHGPFESYDHLGETNWSLLVQAVNHW--HEPTAALMRPF---DWRIDDLMISFSVPGGGVGPHLDQY---------------------------VFIIQ-----------GTGRRRWRVGEKLQMKQHCPHPDLEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSV 200
3 -6.130IDP04136 5-methylthio-3-oxo-1-penten-1,2-diol dioxygenase, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA4258 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  8  98.......................................................................................................................................................................EHHHTDDEVRFIVSGHGIFAI-----------EGKDGTFFDVELEPGDLISVPENARHYFTLQDDRQVVAI 157
4 -6.060IDP01712 thiJ/pfpI family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA2657 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  10  57..............................................................................................................................................................LRIKPDISLDECTLESKDLLILPGGTTWSEEIHQPILERIGQALKIGTIVAAICGATDALANMGYLDTRKHTSN...... 130
5 -5.620IDP02234 cytosol aminopeptidase family protein [Francisella tularensis subsp. tularensis SCHU S4] FTT1094c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  11  126EKYKSKTQQSKVKLYLPQQYQHILATIEANYLVRDMITTPAEDMGPADIANVIQQLAKEFNADFEEIVGEELVEQGYMGIYTVGKGSHRAPRLVRLNWGDTAHPTVSIVGKGVAFDTGGLDVKPSSAMQLMHKDMG-----SANAIGLAYMIMKHKLPIRLSLVIPTVEIKMKNGTNVQVTNTDAEGRLILAEPLYEEAQKKPQYLIDFSTLTGAARVAVGLEIAAFFCNNDDVASQV 372
6 -5.170IDP05565 gene: spl; peptidoglycan lytic protein P45 [Listeria monocytogenes EGD-e] lmo2505 [Listeria monocytogenes EGD-e]  ali follow..  14  186NKIEAQKAEKEAIVAQLASDQASAENAKAGLVSERDKAAKEATARATALREATSSNVGQESSSSDTSTPSKKSNTTKNVASNDNNSAPSAATPSSGGYSAMISAANAQLGKPYSLGATG----PSA-------D---------------------------------------SGFTSYA-----FRAAGVSLPRTSGGQYAAASKISAQAKPGDLVFFGGQMINAQNNGVK-GYGRV 398
7 -5.160IDP01141 Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP) (Leucyl aminopeptidase) BA_5155 [Bacillus anthracis str. Ames]  ali follow..  11  180ARTLVNMPPNVLTATKLAEYAVELAEKYDMDY--KVLEKEEMEELGMGALLAVNQGSVEPPKMIALIYKGKEEWTDV-----------------------------GFVGKGITYDTGGYSLKPREGMVGMKGDMG-----AAAVLGAMEIIGELRPEQNVIAVIPSTDITSMSGKTIEVLNTDAEGRLALADGITYAKKLGANYLIDVATLTGGVIVALGNHTTGAMTNNEELFEQV 396
8 -5.120IDP01962 cytosol aminopeptidase family protein [Coxiella burnetii RSA 493] CBU_0572 [Coxiella burnetii RSA 493]  ali follow..  6  117NAYRKRSPYLAKLFLPQAHRKRVTDWLTTIYLIRDLINTPA-EDMGPSELAQAVKHVAKEFEAKVKIIESKDLETEFPAIYAVGRAGSRPPLLIDLKWGDIKAPKVTLVGKGVCFDSGGLDIKTPGGMLLMKKDMG-----AAHALGLARMIMLQQLPVRLRLLIPAVEVQTRARKTIEITNTDAEGRVVLADALAEAVKEDPDLIIDFSTLTGAARIALGPNLPALFANQDSLAQAL 362
9 -5.120IDP05450 hypothetical protein lmo2776 [Listeria monocytogenes EGD-e] lmo2776 [Listeria monocytogenes EGD-e]  ali follow..  10  14..............................................................................................................................................................TVLSPMGALAAQNLNEGETSLDSLMSANKTGEKVIFSETTTGKKPLLKAAQSAGGGT--YQHTKKTHRSSASNYRATER. 103
10 -5.070IDP95226 gene: wafX; WafX [Acinetobacter baumannii] AHB32312 [Acinetobacter baumannii]  ali follow..  11  8SIIIVNYNTYNLVLQCIESVIKNTKKISYEIIVVDNNSPNREIEKLNEIYPKLVLNTKNSGFGIANNIGNKYANGKFLFLLNSDTIVLDNSIYTLYENPCVGACGGNLCDIDLKPATSFTRFMPSILSDIDSL---FNGISRILYNKDSFYSTETSPFKISGNI---------SGADLMLSKAVFDELGGFDEN------YEETDLLFRLRNKGYQTYITSKIIHLEGASETFKPIKL 240
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.