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current user: public |
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Query: PF05957.13; Q9HZG8_PSEAE/12-109; Bacterial protein of unknown function (DUF883 topsan), from PfamA32U |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . | |||||||
# | Score | Template | Links and tools | %id | First | DELLAEFQALVADTEKLLQSTADVAGDQAEEIRGKIHDSLKRARDTLRDTKDSLKDNVRERSQAAVDATEVYVGEHPWQSIGIAAGVGFLLGLLVSRR | Last |
1 | -39.300 | IDP00457 hypothetical protein YPO0570 YPO0570 [Yersinia pestis CO92] | ali follow.. | 34 | 8 | EHLRAELKSLADTLEEVLQSSTDKPKAELDKLRAKAESALKDTRVRLSE----TSDKIAAQTKEIADKADNYVHDNPWTGVGIGAAVGVVLGVLLSRR | 101 |
2 | -12.600 | IDP05688 hypothetical protein lmo1601 [Listeria monocytogenes EGD-e] lmo1601 [Listeria monocytogenes EGD-e] | ali follow.. | 10 | 94 | GKLADTVSKQSKAVKEVVSQNKEENQEAAKKAADAVKNEAKDAADDVEKAADKAKKEAKKAVDEGKDEAKKIASD....................... | 168 |
3 | -12.300 | IDP02352 hypothetical protein FTT1334c [Francisella tularensis subsp. tularensis SCHU S4] FTT1334c [Francisella tularensis subsp. tularensis SCHU S4] | ali follow.. | 10 | 75 | SQAADTLVNKSENAKKILDTKANQASQSLGQMADDAEKDTSQAATMIANKAKAAQSKLVQQTDKSKQALEKTVTN....................... | 149 |
4 | -8.400 | IDP06206 hypothetical protein HP0489 [Helicobacter pylori 26695] NP_207286 [Helicobacter pylori 26695] | ali follow.. | 12 | 160 | NQITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENKTQAITNINEARESATTQITTNKQE....................... | 234 |
5 | -7.830 | IDP02711 gene: atpF; F0F1 ATP synthase subunit B [Bacillus anthracis str. `Ames Ancestor`] GBAA5551 [Bacillus anthracis str. `Ames Ancestor`] | ali follow.. | 14 | 56 | ERNNAEAKKLVEEQREMLKQSRVEAQELIERAKKQAVDQKDVIVAAAKEEAESIKASAVQEIQREKEQAIAALQEQ-VASLSVQIASKVI........ | 144 |
6 | -6.720 | IDP01310 outer membrane protein OmpH VC2251 [Vibrio cholerae O1 biovar El Tor str. N16961] | ali follow.. | 12 | 57 | KDKAAELQAIQADAKTKIEKLKRDGQLMGQDEVEKLRIEIGQLDSKYKIKAQALEQASARREAEEKQKLFKVIQD--VKKVAEKEGYDIVL....... | 146 |
7 | -6.440 | IDP01978 gene: ygiM; putative signal transduction protein [Salmonella typhimurium LT2] STM3203 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] | ali follow.. | 14 | 94 | PDLENQVKTLTDKLNNIDTTWNQRTADMQQKVSDSVINGLKEENQKLKNELIVAQKKVSAANLQLDDKQRTIIMQWFMYGGGVLG-IGLLLGLVLPH. | 191 |
8 | -6.410 | IDP02267 hypothetical protein GBAA0987 [Bacillus anthracis str. `Ames Ancestor`] GBAA0987 [Bacillus anthracis str. `Ames Ancestor`] | ali follow.. | 8 | 8 | EQITGKVEKTKGQVKEGIGEVTEDRKLKNEGKWDKTKGTIKEKVGKVKQKISDGLDNKE....................................... | 66 |
9 | -6.310 | IDP02240 gene: ompH; outer membrane protein OmpH [Francisella tularensis subsp. tularensis SCHU S4] FTT1572c [Francisella tularensis subsp. tularensis SCHU S4] | ali follow.. | 6 | 51 | KPDATKLKQEQDNIMQQIKTLQDNSATMTKSELDKKQQQIQQEQQNFAEKARILQQKEYTAKDKLSKKFQASFDK--VQTIAKQKNYNVVL....... | 140 |
10 | -6.280 | IDP04668 phaP protein [Bacillus anthracis str. `Ames Ancestor`] GBAA1327 [Bacillus anthracis str. `Ames Ancestor`] | ali follow.. | 14 | 94 | KELSAHMHQLTVSPTKTSLSILTQTSGQFEETTKQFIEQQQLQREEAQKQLEGFLEEFKLKQLELAKKFEENSKN....................... | 168 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5. |