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Query: PF07476.11; A8AJ73_CITK8/162-410; Methylaspartate ammonia-lyase C-terminus, from PfamA32U

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst CVPEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFQGEKLREYVRWLSDRILSLRTSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRLLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAARPMRMLVKPGMGFDEGLNIVFNEMNRTIALLQLast
1 -50.400IDP01895 gene: ycjG; putative chloromuconate cycloisomerase [Salmonella typhimurium LT2] STM1681 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  101.RQRQQSLAGLLGVTLAPVFTEQMAASAAALWEKGATLLKIKLDAR---------LISERMVAIRSAV-PEATLIVDAN------ESWRPEGLAARCQLLADLN---VAMLEQPLPAQDDAALENFIHPL-----------PICADESCHTRSSLKALT--GRYDMINIKLDKTGGLTEALALATEAREQGFGLML-GCMLCTSRAISAALPLMPQVS---FADLDGPTWLAVD............... 307
2 -45.400IDP90609 O-succinylbenzoate synthase [Vibrio cholerae O1 biovar eltor str. N16961] VC1972 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  99.ALPEQGNYYVAP----TGDPDELLPVLNNL--PGQKVAKVKVGLY------EPIRDGMLVNLFLESM-PDLTLRLDANR------AWTPAKALKFAQYVAPSLRSRIAFLEEPCQSPS-----------ESIAFSIDTGIAIAWDETLQEAVRDAALENLLGVKTIVIKPTLIGSVYRVEALIEKAKTLGLQAVI-SSSLESSLGLNQLARLAHKLLPNEVPGLDTIGLFRAQ............... 304
3 -45.200IDP00994 gene: menC; O-succinylbenzoate synthase STM2306 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  114....................PDDLVLRLADM--PGEKIAKVKVG------LYEAVRDGMVVNLLLEAI-PDLHLRLDANR------AWTPLKAQQFAKYVNPDYRARIAFLEEPCKTRD-----------DSRAFARETGIAIAWDESLREADFTFEAE--EGVRAVVIKPTLTGSLDKVREQVAAAHALGLTAVI-SSSIESSLGLTQLARIAAWLTPGTLPGLDTLHLMQAQQI............. 300
4 -45.100IDP04111 gene: menC; putative O-succinylbenzoate-CoA synthase [Yersinia pestis CO92] YPO2524 [Yersinia pestis CO92]  ali follow..  11  95.LKQTLPLSADYRKAP-TGDPDELFAVLQAL--PGEKVAKVKVG------LYEAVRDGMIVNVLLEAL-PDLTLRLDANR------SWSRAKADGFAKYVNPALRSRIAFLEEPCKTRA-----------ESREFAQDTGIAIAWDESVREADFQ--VEAEPGVAAIVIKPTLVGSLARCQQLVQQAHQAGLVAVI-SSSIESSLGLTQLARLAAWLTPVTVPGLDTLDLMQAQVV............. 301
5 -17.300IDP02814 gene: eno; enolase (2-phosphoglycerate dehydratase) [Francisella tularensis subsp. tularensis SCHU S4] FTT0709 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  10  144....PVPMMNVINGGSHADNNVDMQEEALRCGTEVFHILKKVLIADGPSNEAAIEAILKAVKEAGYEPGKHVFIALDPASS--ENKSLTSEEMIDYYAAW--VEKYPIVSIEDGLAEEDWAGWKLLTEKLGNKVQ-------LVGDDFVTNPSILAKGIEKGIANSILIKLNQIGTLTETFEAMAMAGQAGYTCVVSHRSGETSDTIIADLAVATCS................................ 386
6 -17.000IDP90296 enolase 2 [Toxoplasma gondii ME49] TGME49_068850 [Toxoplasma gondii ME49]  ali follow..  14  184....PVPFFNVINGQEAIQIGAEVYQHLKVVIKKKYGLDATNVGDEGSGATEALDLLMEAIKVSGHEGKVKIAADVAASEFFLQDDK-TGEELRNLYKDLCQ--KYPFVSIEDPFDQDDFHSYAQLTNEVGEKVQ-------IVGDDLVTNPTRIEKAVQEKACNGLLLKVNQIGTVSESIEACQLAQKNKWGVMVSHRSGETEDSFIADLVVGLRT................................ 433
7 -15.600IDP90293 enolase 1 [Toxoplasma gondii ME49] TGME49_068860 [Toxoplasma gondii ME49]  ali follow..  13  153....PVPFFNVINGREAIRYGSETYHHLKNVIKNKYGLDATNVGDEG--FAPNVATAEEALNLLVEAIEGKIKIAFDAAAS-NASKHLTGEKLKEVYEGWLK--KYPIISVEDPFDQDDFASFSAFTKDVGEKTQ-------VIGDDLVTNILRIEKALKDKACNCLLLKVNQIGSVTEAIEACLLAQKSGWGVQVSHRSGETEDSFIADLVVGLRC................................ 402
8 -15.600IDP90735 gene: eno; phosphopyruvate hydratase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1672c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  142....PVPMCNIINGGAHANNNVDFQEEALRSVCEIYAILKKELANSGHSTLANNTEPIDLLMTCIKKAGNRVKIALDVASTEFFKDG-SSEALIERYVEL--CAKYPICSIEDGLAENDFEGWIKLTEKLGNKIQ-------LVGDDFVTNEDILREGIIKKMANAVLIKPNQIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNT................................ 379
9 -10.500IDP00735 NADH-dependent flavin oxidoreductase, Oye family SACOL0959 [Staphylococcus aureus subsp. aureus COL]  ali follow..  142.........REMTNEEIEQAIKDFGEATRRAIEAGFDGVEIHGANHANQYKFPVAVIEEVLKAKEAYGNKDFIVGYRLSPEEAESPGITMEITEELVNKISHMPIDYIHVSMMDTHATTREGKYAGQERLPLIHKWINGRMPLIGIGSIFTADEALDAVENVGVDLVAI................................................................................ 319
10 -9.280IDP01917 gene: hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1429 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  10  45...KRLHIVDLDGAVAGESLNLSVIERICKAVRGGIRSLVFSVGVDKVILGTAALYDKTFLEEAVLLYKEKIIVGIDAKNGFVATRGWLDVSEISYIDLAKQMEKIGVQTI---FTDISKDGTLAGPNIEQLELLQKSVAIRLIASGGVASIQDVKKLNDMNIYGVIIGKALYEKDLEEVVEVTKLC.............................................................. 239

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.