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Query: PF08568.10; Q6CFU3_YARLI/1-673; Uncharacterised protein family, YAP/Alf4/glomulin, from PfamA32U

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQLTDDHKKDLEKLGEELKGKEEHTVAGEDEEDVNHGADDSEDAEDEDAEDENDYTELDVDIVCQFIKDAAREAEKTGDYISYATVIDIHCSDPSRYKHVDRVKILTSLLEVLRTNPKICEEIGWDLPALLLPYFNVEDFDFNDGLEGHPTFYPLIMLFSTLAEYGNPKELFLKTVETLSTLTCDRAPENDKLKFKQAESLRKFEVCKFHVLEELMSSCMKKIKTQYPSRFLASAASAILMFSARNAALFRHFPLIVGILARRVYVFIRDWGMDGDEPMDMSPDEQAKSAKILQSLSTYFFYSWFHRVAVRWSSNLFREIKHSIHELPRAERAKYDNPKSNGSAVYTIYNRWGTLALSLDLDPSQYFLPLIQEIQEDVQEATKGGLDDTLAGFSKSSLSDASPIAFVDYSMYDDASEIPLSQEGLLMLATQYMMENRDHSLNISLDQLVSLTLYLVHRSSPKEPLPFAITDLLLFWGWWTLKDMERPEVRQLDEAFYVKYLQFLVFISASSPLPEIRNIAYTLCGRLLYLQHESVSFAFIADTIADCPFENAQVAMVGILKRLMIPDEISDQLSKLRIPDVPTREGVEHQKASQTTIPTTPEHVDTIKSLCNAALEQENTHLVITWLNFLSTVKLDCGFAGDYAERVEKVIDEVEDENDRTLIRLALDVLAKTLast
1 -7.550IDP02058 gene: cpxP; periplasmic stress adaptor protein CpxP [Yersinia pestis CO92] YPO0075 [Yersinia pestis CO92]  ali follow..  14  55INLTEQQRQQMRDL-------------MRQSHQSQPRLDLEDREAMHKLITADKFDEAAVRAQAEKMSQNQIER------------------------HVEMAKVRNQMYNLLTPEQK........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 135
2 -7.030IDP06019 phospholipase A2 activating protein, putative [Toxoplasma gondii ME49] EEB01121 [Toxoplasma gondii ME49]  ali follow..  565.GINKSCLEQITSIRRNTGLSSAPSSSSVTSASTPASDLKDQWASYGGGVSK-TFAKGNFEGAGKKIMEFDAQFPEDSPAKQYLLDALEKIQSPSFMKKEFRACELDVIFEKL---------AVWDVWRALAVALRHLKEACASQADETPLILCCLRFLANLMDLTTNRTVMLRHANVV--LESLASDRVLTNPNKNVRLTAASLLANFAVAFKVLKLLRGLMEREGDADVFYRCLLAVLTILATPPQPQQRRLLRGACQEIDMADVLPPLNQNIPAEGRIGDAAQDILLLL............................................................................................................................................................................................................................................................................................................................................................................................. 898
3 -6.980IDP91706 gene: STAT2; signal transducer and activator of transcription 2 isoform 1 [Homo sapiens] NP_005410 [Homo sapiens]  ali follow..  8QNLDSPFQDQLHQLYSHSLLPVDIRQYLAV---------EDQNWQEAALGSDDSKATMLFFHFLDQLNYECGRCSQDPESLLLQHNLRKFCRDIQPFS-QDPTQLAEMIFNLLLEEKRILIQ-----AQRAQLEQGEPVLETPVESQQHEIESRILDLRAMMEKLVKSISQLKDQQDVFCFRYKIQAKGKTPSLDPHQTKEQKILQETLNELDKRRKEVLDASKLGRLTTLIELLLPKLLEQLETWFTAGAKLLFHLRQLLKELKGLSCLVSYQDDPLTKGVDLRNAQVTELLQRLLHRAFVV---------------ETQPCMPQTPHRPLILKTGSKFTVRTRLLVRLQEGNESLTVEVSIDRNPPQLQGFRKFNIKTLTPEKGQSQGLIWDFGYLTLVEQRSGGSGKGSNKGPLGVTEELHIISFTVKYTYQGLKQELK---------TDTLPVVIISNMNQLSIAWASVLWFNLLSPNLQNQQFFSNPPKAPWSLLGPALSWQFSSYVGRGLNSDQLSMLRNKLFGQNCRTE-DFTKRESPPGKLP----KILELVHDHLKD........................................................................................................... 570
4 -6.480IDP92581 splicing factor 3a protein, putative [Toxoplasma gondii ME49] TGME49_021940 [Toxoplasma gondii ME49]  ali follow..  6........RGVSLFIQDVRNAP------SSSREQARVLQELSKIRQRFAHPKKPLTGYEKKKCLTKL--------------LYIHLL-ISLLSSPHYS-ERSAAFL-FCSLLLVDSHTASRDLP-DLRSLCCSSIKKE---------SLQHEDFAALALDCASYISDPAELFPLMQATANPSSSASP-----------RQKAYSCMLVFFRLLPCEVWASRLGQALLFEQCLLSLVNLIFHAVLQTSQLHRWQQQLQLSAINILARILSRDVPENLFYRGIPAP---LAVRLL---------------------------------------------------------QLLQCFQVSGGKREVLSDEPSRREDKRRDREEDSREDEAVVKQQREAVALSLNEIVKTIFTQVATANEEERQSSSGKGDRTGGSGDA------AVPQRGTSFFSRKKGLGAHAVSPSVIQHAVLYEAISLSTHLQADADKDLKLSAAALLCSFV-----EEGDSNFRYKSLSLVAAMAADPDVHPELKGAVPAILRL--VSLRRQAISLLFALS---------------------------------------------------GPDNWSEIVL--ALLESLHRDAETLPNISAHIAVLVETYAPDPT--LVDVAFQMLQRA 529
5 -6.010IDP92700 hypothetical protein SAVC_07990 [Staphylococcus aureus subsp. aureus VC40] YP_005291191 [Staphylococcus aureus subsp. aureus VC40]  ali follow..  1580.VIKPEAQQAIKASAENQVESIKDTPHATVDELDEANQLISDTLKQAQQEIENTNQDAAVTDVIEQIKPKVRRKRAALDSIE-NKNQLDAIRNTLDTTQDERDVAIDTLNKIVNTIKNDIAQ-------------------NKTNAEVDRTETDGNDNIKVILPKVQVKP------AARQSVGVKAEAQNALIDQSDLSTEEERLAAK--LVEQALNQAIDQINHADKTAQVNQDSINAQNIISKIKPATTVKATA----LQQIQNIATNKINLIKANNEATDEEQNIAIAQVEKELIKAIASAVTNADVAYLLHDEKNEIREIEPVINRKASAREQLTTLFNDKKQAIEANIQATVEERNSILAQLQNIYDTAIGQIDQDRSNAQVDKTASLNLQTIHDLDVHPIKKPDAEKTINDDLARVTALV....................................................................................................................................................................................................................................................... 1985
6 -5.950IDP01826 gene: zraP; zinc resistance protein [Salmonella typhimurium LT2] STM4172 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  42SPLTTEQQATAQKIYDDYY-------------TQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKE---------------------MESLGQKLDEQRVKRDVAMAQAGIPRG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 124
7 -5.870IDP91507 putative outer membrane protein PopN [Vibrio parahaemolyticus RIMD 2210633] VP1667 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  10  48.SLFD-----MEELTSLGSEKAEKDLTKRKIKDGGVRVNEAELVSDYLRKVPDLEKNQKIKDLAAKMAGGNISTIAQEEKSHQYLALKAVKKYLSNPESKHLLALIDQAILKIEQNPDSWSQIEIRVSHFADEFSKEQEFSSLHQLRGF---QGLGSAYQDVVERFGEQEVSTAVDFMLQGMSADLSVQGSNIDSVK---SDMQKLKTLNTLQDQVGRLFQMFKPERMSHGLSGF...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 297
8 -5.710IDP91716 gene: STAT1; signal transducer and activator of transcription 1-alpha/beta isoform alpha [Homo sapiens] NP_009330 [Homo sapiens]  ali follow..  1MSQ-----YELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQ-EKQDWEHAANDVSFATIRFHDLLSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQ-EDPIQMSMIIYSCLKEERKILENAQRFNQAQSGNIQSTVMLDKQKELDSKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQ-NALINDELVE-LDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQLIQSSF.................................................................................................................................................................................................................................................................................................................................................................................... 317
9 -5.660IDP91491 putative type III export protein [Vibrio parahaemolyticus RIMD 2210633] VP1692 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  13  16TDVRHYERDDAKRMSELMTRETTAEVSRSAPKDTLTKVEEKLNAIKDWYASIKEAETVSKQSVLSSLKDVISDPQTQKEALWYA----FHQAKSAKGTDDAVPELLSVLKQELLGDGQLMAEPPTDRAAL-------------------------KAMLAQSFPLGAQKEQAL--WHCWAELK----SLPEMTSTVDLVREELSFVIQKNAMVKNIMTHSHKLD................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 206
10 -5.610IDP05495 gene: fliD; flagellar cap protein [Clostridium difficile 630] CD0237 [Peptoclostridium difficile 630]  ali follow..  10  289.AFVDDYNALMDKVYGLVTTKKSKDYPPLTDEQKDDMTTEEIEKWEKKAKEGILRNDDELRAFVEDIQSMFFGDAD-----TIIALRKLGISEHENYNKKGQISF-DTFSKALIDDSD-------KVYKALAGYSSNYDDKGMFEKLKKIVFEYSGSSASKLTKKAGMENSSSASQNVYSKQIAEQERNISRLVEKMNDKEK-----RLYAKYSALESLLNKYSSQ--MNYFSQAQGN................................................................................................................................................................................................................................................................................................................................................................................................................................................... 507

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.