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Query: PF09847.9; O29125_ARCFU/30-435; Membrane protein of 12 TMs, from PfamA32U

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SLRVQVAKSFFIMTFLGSFLCWVAFISSGLGLSLIFTLSLVFSQIYPAQNIAISASSRVFEPLRYLPVRFSERMLVVFFIDSINILAFATPTIAVLMVKNLYFGLYSLLWIIAAILLGYSMVFLYYALFGVKVRSGFSKSVLAGILFFAVLVFALRRFQEIPDLTPYLTPHLLLLSYAASSATIKLSTGRVWRSILNPEIVEVKGSSRLSSGSPLRAMLIKDFRLILRKNALFPLIVPLVIVMPNVVSIANMPNLSIFIITTISTLSTIDLRIIGNLENVDFLRMLPLSKRGFVMSKACLIFVISFAASLPAGSIAFIVSQNPFYLFMAFAIPAIVSMLSSLIIFWQKGEEIYFPEVGFLKWIGLLLVNFGAVYAVLSPRFILSQPVADIISSVLTLLAMTALFEKLast
1 -6.110IDP00408 gene: ccmB; heme exporter protein B YPO2735 [Yersinia pestis CO92]  ali follow..  11  2......................................................................................................................................................................................................................FISVLRRELKIAFRKGAEIVNPLWFFLIVITLFPLGRIAPGIVWVAALLASLLSLERLFRDDFYDLEQLLLLPTPLPLTVLGKVCAHWVVTGLPLLVLSPLVALLLSLDVNTAIAMGLTLLIGAIGVALTVGLRKGGVLLSLLVLPLYIPVLIFATAAIDAASM-----AMPIDGYLAILGAMLAGSVTL.. 205
2 -5.660IDP92707 putative membrane protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] ABD20650 [Staphylococcus aureus subsp. aureus USA300_FPR3757]  ali follow..  19  1......................................................................................................................................................................................................................MKALLIRNFKL--RRYTLIIYV--LLLTLYPFYIMLDSTKFFYLLTILIIWILDAGHLFRLNRRSYYFYMSLPVSKKQLLNANYITCIVLTLIGTLVISLYAY-PNSIYFSTAYAFVISNFLSIPIAFSQFTELRRV-KVPYGIYVFTIIILVPFLFSIAIVLVNYFVLSQNIGFLIISIVILIV....... 207
3 -5.620IDP00178 putative ABC transporter, integral membrane protein YPO3405 [Yersinia pestis CO92]  ali follow..  13  9......................................................................................................................................................................................................................LQSIWIKEITRFARQTLVPPVITMSLYFVIFGNLIGARGLIMMAVITNAYSNVAASFYGAKFQRSIEELLVAPVPTHIVIIGYVGGGVARGICVGILVTIISLFF-HSWSMIALTLILTAILFSLGGLLNAVFAKTFDDISLVPTFVLTPLTYLG-GVFYSLLNPYGFLGITDVSLAYTIGVLVVFIAVF.. 240
4 -4.250IDP92755 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG09414 [Vibrio cholerae O1 biovar El Tor]  ali follow..  24  52............................................................................................................................................................................................................................................................................................SLPTLADAYLKHCLQTVAESP---RLPTRSEWNLANKRAAALKLAENNPTRIQMLNEIEEAERKQNNISNPNANFLKWL----INSVAAYANMSPAQCLQLPYKAFIT.............. 171
5 -4.110IDP92800 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG36652 [Vibrio cholerae O1 biovar El Tor]  ali follow..  24  52............................................................................................................................................................................................................................................................................................SLPTLADAYLKHCLQTVAESP---RLPTRSEWNLANKRAAALKLAEDNPTRIQMLQEIDEAERKQNNISNPNANFLKWL----INGVAAYANMSPAQCLQLPYKAFIT.............. 171
6 -4.000IDP05012 cell wall surface anchor family protein [Bacillus anthracis str. Ames] BA_5070 [Bacillus anthracis str. Ames]  ali follow..  10  108...........................................................................................................................................................................................................................................................................................................................................................AVQGEKLPNTASNNVLSACLVGIGTLFGLKRRNKVKA...................... 148
7 -3.990IDP05443 hypothetical protein lmo0463 [Listeria monocytogenes EGD-e] lmo0463 [Listeria monocytogenes EGD-e]  ali follow..  24  1............................................................................................................................................................................................................................................................................................................................................................................MVLISFCGMFLLSPERVQASQTVVEVFIS............. 29
8 -3.540IDP02637 gene: pagK; PagK [Salmonella typhimurium LT2] STM1867 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  4..........................VKSVFLAMVLILP---SLYPALTIAADSQDHKKEETIKPMPQKWCNLWPAGI........................................................................................................................................................................................................................................................................................................................................ 53
9 -3.510IDP05521 putative cell surface protein [Clostridium difficile 630] CD1858 [Peptoclostridium difficile 630]  ali follow..  15  1.................................................................................................................................................................................................................................................................................................................................................................MKKMKNKKAAGVVLLIVGVVISLFAGSKIVFAQGGLFTTLVNPIEAVAQIKVE 57
10 -3.310IDP05046 hypothetical protein BA_3529 [Bacillus anthracis str. Ames] BA_3529 [Bacillus anthracis str. Ames]  ali follow..  11  5..........................................................................................................................................................................................................................................................................................IFKKNNLIKMFFALTFSFLCFAPTDTLAAEIKGSPIKGTTKQESTTPGPSYVAVETYVTVEAYFSKREYALPPARYYHQYSGYLIVVYGFIKA............................... 117
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.