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Query: PF09859.9; Q98JN4_RHILO/75-246; Oxygenase, catalysing oxidative methylation of damaged DNA, from PfamA32U

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GEYRYFRYPLPDLLGGLRSALYPRLGEVANRWNERMAIPLRYPATHADFLDQCHAAGQVRPTPLLLQYVPGDFNCLHQDLYGDLAFPLQVAILLSEPGKDFTGGEFALTEQRPRMQSRVEVVPLRQGDAVAFAVHNRPVQGTKGNYRVNLRHGVSRLRSGMRHTVGIIFHDALast
1 -8.310IDP02651 gene: sipW; signal peptidase I [Bacillus anthracis str. `Ames Ancestor`] GBAA1287 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  44........................................................................................FKSVLSGSMEPTFLTGSIIAIEPTKDGS------KYQKGDVITFKEKDEKI----------ITHRIIGVKDTNGKVMYETKGDN 111
2 -6.830IDP90113 unknown [Monkeypox virus] MPXV_ZAI1979_005_021 [Monkeypox virus]  ali follow..  12  34.NVTVSSTDTIDISDCIREILYKQFKNVRN---------------------------EVSSDISFIKYNRFNDMTITDD-----NMGYYLVIYLNRT----KSLKTLIYPTLETVISSSEDI----------------------MFSKSLNFRFENTKREYKLVMC...... 141
3 -6.200IDP00483 putative iron/ascorbate oxidoreductase family protein YPO1316 [Yersinia pestis CO92]  ali follow..  15  153.............LKPVLLQWQEEMTRMSLRLLRAFALALDLDEQAALYGDKPNEHIKLIRYPGREATQSGQGVGAHKD--------SGFLSFL----QDTQRG-LQVEVEEGQ-----IDAVPREGTFVV-NIGELLELASNGYLRATV-HRVETPPAGIRLSIAFFLG.. 294
4 -6.000IDP91976 hypothetical protein HMPREF0837_10616 [Streptococcus pneumoniae TCH8431/19A] HMPREF0837_10616 [Streptococcus pneumoniae TCH8431/19A]  ali follow..  7  55...........................................................................................LVEN---GDFGQTEWSAWVDQKNSSADASTRVIEAKDGAITISSPEK-------LRAAVHRMV-PIEAKKKYKLRFKI... 134
5 -5.710IDP05082 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2179 [Listeria monocytogenes EGD-e]  ali follow..  10  1.........MNHLKKLVSILICTLLIVSLLPFSVWADSQERDGTDVEEITTKEKVTQETTSNETTSEPLKGTTVNKAINAKSFPTGNYSGDFSINSQKDVIESGQLKITGPNTRYQNAKLVINLPKNGEFNQSLNELKIAGATPSYNKTLVYTYQTLNSGVVDKVILKM... 170
6 -5.650IDP02442 prophage LambdaBa02, Clp protease family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA4092 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  10  58........................................................................................TINLYINSPGGSFETMAIMLQRHHAKIISYIDGIGASCASVLPMISDKIIMYANSMM----MIHNAWTYASGNADQL....... 133
7 -5.650IDP00628 prophage L54a, Clp protease, putative SACOL0369 [Staphylococcus aureus subsp. aureus COL]  ali follow..  10  53........................................................................................EIDVHINSSGGSFEGHAIMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFL----MIHNSWVMTVGNAEEL....... 128
8 -5.650IDP04136 5-methylthio-3-oxo-1-penten-1,2-diol dioxygenase, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA4258 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  78..........................................................................................VISLSNSTPNLDELLINFQKEHHHTDDEVRFIVSGHGIFAIEGKDGT-EPGDLISVPENARHYFT-LQDDRQVVAIRIFVTT 163
9 -5.450IDP95193 gene: wagW; WagW [Acinetobacter baumannii] AHB32834 [Acinetobacter baumannii]  ali follow..  9  11GE-KYIVEQLTSILSQLSPTDEVIISDDHST--ETLLLIKSLNDPRIKIITNELGKGYTKNFENAINHSSGDYIFLSDQDDVWVENKVELMMKY--LDFDLVVSDAIISDSHLKPTLGSHFELHNTKAGFLNNWLKTRYIGACMAFRREIFSKLLPFPIQSKWCA----HD. 174
10 -5.370IDP01321 zinc ABC transporter, ATP-binding protein VC2082 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  42GKSTLVKV-ILGLQSLSSGKIIRQSGIRIGYVPQKLKLNDTLPLTVNRFLKLAGRF--------------------STQELSEALRLVGGEHLQSSDMHKLSGGE--------TQRVLLARALLQRPDLLVLD---EPAQGVDVQGQIDLYDLIHTLRNRFGCAVLMVSHD. 180
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.