current user: public

If you have questions about the server, please let us know.

Query: PF11695.8; Q9A5F4_CAUVC/31-168; Domain of unknown function (DUF3291 topsan), from PfamA32U

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst LAQVNVGRLKAPIDHPMIKDFADNLDRINALAEASPGFVWRLTGEGNNATDLAIDSDPLFIPNLSVWSDIPSLGAFVYRSGHVEIMRRRREWFEHMDLYMALWWVPAGHTPTVEEALEKLAHLEAHGPTPAAFTFKVPLast
1 -13.800IDP02222 heme-degrading monooxygenase IsdG [Listeria monocytogenes EGD-e] lmo0484 [Listeria monocytogenes EGD-e]  ali follow..  13  2IIVTNTIKVEKGAAEHVIRQFTGADGHPTKDIAEVEGFLGFEL-----WHSKPEDKDYEEVVVTSKWESEEAQRNWVKSDSFKKAHGRTKDTREQRGNAIARFEVVHVQNPVIVE....................... 120
2 -8.990IDP00080 gene: yneC; putative inner membrane protein NT01ST5073 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  12.LMMHVTLVEINVHDDKVEQFIDVFRQNHLGSIKEPGNLRF--------DVLQDPQVLTRFYIYEAYVDEQAV------AFHKTT-------------------------PHYKTCVEQLEPLMTGPRTKKVFMGLMP 109
3 -8.790IDP90999 hypothetical protein y1744 [Yersinia pestis KIM 10] y1744 [Yersinia pestis KIM10+]  ali follow..  1MEIRVIASIVAKTE--FIEEVKAALHQIIEPSREEKGNLQYDLHTE--------SEQKGSFVFFERWASDEALEKHNKTEHFKQLVKAIDGKLESLEIKKV..................................... 91
4 -8.320IDP93953 hypothetical protein YE0340 [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001004718 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  12.......ICELRCEPENRERVKELVLKFVEPARLETGCLYYDLYQK--------IDEPDTFYIIDGWVNQEAVTSHAENPHVAEVMSDLQPLLTF........................................... 91
5 -6.340IDP91295 SopD-like protein STM0972 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  34...............................................................MGVW---DRFKDCFRTHKKQEVLEVLYTLIHGCERENQAELNVDITGMEKIHAFTQLKEYANPS--QDRFVMR.. 102
6 -6.130IDP02808 gene: yccK; sulfurtransferase TusE [Salmonella typhimurium LT2] STM1084 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  18  12.......................................................DSEGYLKETTQWSEAAANEGIELSAEHWEVVRFVREFYLEFNTSPAIRMLVKAMANKFGENSRYLYRLFPKGPAKQATGLPKP 105
7 -6.020IDP91365 dissimilatory sulfite reductase, gamma subunit [Vibrio vulnificus CMCP6] VV1_2710 [Vibrio vulnificus CMCP6]  ali follow..  14  12.......................................................DAQGYLLDHTQWEEGAEQEGIELTDAHLEVIHFVRDFYEEFNTSPAVRMLVKAMEKSHGPNSKYLFKLFKEGPAKQATGLPKP 105
8 -5.890IDP90084 hypothetical protein CGSHiII_00674 [Haemophilus influenzae PittII] ZP_01795673 [Haemophilus influenzae PittII]  ali follow..  11  31.QQFQQGSEATTRGDTTFKFLLPLAEQGNALAQMMLGVMYA-----------KGQGVKQDDVEAVKWYRKAAEQGYADAQAMLGFSYLLGQSGVQVNKSLAKEWFGKACDNGDQNGCEYYGKLNRGE........... 147
9 -5.570IDP05061 gene: sodA; superoxide dismutase (Mn) [Clostridium difficile 630] CD1631 [Peptoclostridium difficile 630]  ali follow..  13  139................SFEKFKQEFQKSALDVFGS-GWAWLVATKDGKLSIMTTPNQDSPIIGLDVWE-------------HAYYLKYQNR---RNEYIDNWF-----NVVNWNGALENYKNLKSQD........... 234
10 -5.420IDP92086 gene: SOD1; iron-containing superoxide dismutase [Toxoplasma gondii] ABB03945 [Toxoplasma gondii]  ali follow..  15  106................SVENFKDEFSKVAAGHFGS-GWAWLVWDRQGKKVGIEQTHDAGTLLCCDVWE-------------HAYYLDRKND---RPAYIKAWW-----NVVNWDFASKNLENALK............. 201

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 1 3 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Shiryaev SA, Ratnikov BI, Chekanov AV, Sikora S, Rozanov DV, Godzik A,Wang J, Smith JW, Huang Z, Lindberg I, Samuel MA, Diamond MS, Strongin AY. Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase. Biochem J. 2006 Jan 15;393(Pt 2):503-11.