current user: public
If you have questions about the server, please let us know.

Query: PF13532.6; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily, from PfamA32U

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210
# Score Template Links and tools%idFirst GLLIIKQFLTPQEQQELVDDSRCMGLGEGGFYKPTYASGAKCRLHQMCLGRHWNVKTEKYEDQRSNYDYAPIRTLPDSWKTYAQRSLDAAKKIDPLVMGSCKKMTPDICVVNFYKKAGRNGMHIDKDESDEAMSMGSPVISFSVGCAAEFAYIDHYPDPHEAVPIVRLESGDALVFGGPARTVVHALTRVYNNTQPSWLRMRSGRLNLTFRLast
1 -7.900IDP90534 gene: ssb; single-strand DNA-binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1071 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  1.............................................................................................................MFNKV-----LVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCEVANQYLTKGSKVLIEGRLRFQWNGQNRSKHSIQVENMEMLGNS...... 107
2 -7.550IDP91768 gene: ycfD; conserved protein [Escherichia coli str. K-12 substr. MG1655] b1128 [Escherichia coli str. K-12 substr. MG1655]  ali follow..  15  80................................................................................SLLVQAVNHWHEPTAALMRPFRELPDWRIDDLMIVPGGGVGPHLDQYD----------VFIIQGTGRRRWRVGEKLQDPFEAIIDEELEPGDILYI---PPGFPHEGYALENAM----------NYSVGFR 203
3 -6.460IDP91283 single-stranded DNA-binding protein [Bacillus anthracis str. Sterne] NT05BA5557 [Bacillus anthracis str. Sterne]  ali follow..  13  1..............................................................................................................MNRV-----LVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADAENVANYLKKGSLAGVDGRLQTR-DGKRVYVTEVLAESVQFLEPR...... 105
4 -6.140IDP06231 fructose-bisphosphate aldolase [Streptococcus pneumoniae TIGR4] NP_345117 [Streptococcus pneumoniae TIGR4]  ali follow..  8  112..................................................................................VEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIFLAAGIGNIHGPYPVNWEGLDLDHLQKLTEALPGFIVL--------HGGSGIPDEQIQAAIKLGVAKVNVN.. 232
5 -6.130IDP90368 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_143 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  15  27...............................................................................................................NLWMRNATLKVEGDATIDDTLTSRDLKVTGPTIHTDLDLSVGGDVKGGRTVLGETVL-EGDFNIKCNQGQ-----VPQFTNLSDP-----LSARDAITF. 114
6 -5.890IDP06008 choline/ethanolamine kinase, putative [Toxoplasma gondii ME49] EEB01489 [Toxoplasma gondii ME49]  ali follow..  6  243..................................................................................AQDQQKTCCFQEGGGGRVELAEVPTRVLIRVYGHPADTELFDPRVEQRLF----KQLGEVGIAPCCLGEFEGGRVEAWLEGQPLKLHTEEIQTKLASQLPHRLKLQ....................... 347
7 -5.790IDP00212 putative phage minor tail protein YPO2123 [Yersinia pestis CO92]  ali follow..  7  23GV------VAQKSRVEKYFPCENLATNPTEQFHLDPTGYVEAEDWGTITAIVHSHPDATTQPSELDMAQCDNNELPWHIVSWPEGDLRTIQPRGDLPLVGLGHTDCWGLIMSYFRQTHDIELKDYRVDRHWWESGTENFYMDNWYECGFREFSGP------------AQPGDLIIMQVSAPVANHGIDGMLLHHPYGQLSQRVERTMKVVR 230
8 -5.690IDP91264 protein export protein prsA [Bacillus anthracis str. Sterne] NT05BA1100 [Bacillus anthracis str. Sterne]  ali follow..  6  40....FYEQMKTQAGKQVLNNMVMEKVLIKNYKVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQL------AQEKAIEKTITDKELKDNYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSE-SKEKGGDLGF-FGAGKMVKEFEDAAYKLKKDEV-----KSQFGYHIIKVTDIKEPEKSFEQSKADIKKELV 240
9 -5.620IDP05707 hypothetical protein lmo2762 [Listeria monocytogenes EGD-e] lmo2762 [Listeria monocytogenes EGD-e]  ali follow..  10  5..........................................................................................................................................LLVCAAGMSTSLLVTKMKAHATSIGEEIEIEA-DIVMLGPQVRYQKPQVDELVQGRIP............... 74
10 -5.550IDP90804 single-strand DNA-binding protein [Vibrio cholerae O1 biovar eltor str. N16961] VC0397 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  11.......................................................................................................................LIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKEVAGEYLRKGSQVYIEGQLQ.............................. 85
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.