Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF14117.6; D0J295_COMT2/9-67; Domain of unknown function (DUF4287 topsan), from PfamA32U

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .
# Score Template Links and tools%idFirst GPASYFPSIEKAYGKPVTHWLKILDELRDKKHMEQVAHLKLEHGIGHGHANALVAYHRALast
1 -4.490IDP95077 ATP-dependent Clp protease proteolytic subunit 2 [Peptoclostridium difficile 630] YP_001089868 [Peptoclostridium difficile 630]  ali follow..  9  148..ERLDKILSENTGKSIEDIRRDTDRD---------NFMTALEAKEYGLIDYIMN.... 191
2 -4.490IDP01974 gene: clpP; ATP-dependent Clp protease proteolytic subunit [Listeria monocytogenes EGD-e] lmo2468 [Listeria monocytogenes EGD-e]  ali follow..  9  148..ERMNTIMAEKTGQPYEVIARDTDRD---------NFMTAQEAKDYGLIDDIII.... 191
3 -4.460IDP01433 gene: clpP; ATP-dependent Clp protease proteolytic subunit VC1922 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  153..NKLNRLLAEHTGQPIEVIERDTDRD---------NFMSADQAVEYGLVDAVLK.... 196
4 -4.430IDP01711 gene: clpP; ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis str. `Ames Ancestor`] GBAA5380 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  148..EKLNQILADRTGQPLEVLQRDTDRD---------NFMTAEKALEYGLIDKIFT.... 191
5 -4.430IDP01105 ATP-dependent Clp protease proteolytic subunit 1 (Endopeptidase Clp 1) BA_2788 [Bacillus anthracis str. Ames]  ali follow..  13  148..HDINKMIAEKTGQPIERVAHDTERD---------YFMTAEEAKAYGIVDDVVT.... 191
6 -4.430IDP02821 gene: clpP; ATP-dependent Clp protease subunit P [Francisella tularensis subsp. tularensis SCHU S4] FTT0624 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  9  151..DRLNKVLAHHTGQDLETIVKDTDRD---------NFMMADEAKAYGLIDHVIE.... 194
7 -4.420IDP00838 gene: clpP; ATP-dependent Clp protease, proteolytic subunit ClpP SACOL0833 [Staphylococcus aureus subsp. aureus COL]  ali follow..  13  148..EKLNRILSERTGQSIEKIQKDTDRD---------NFLTAEEAKEYGLIDEVMV.... 191
8 -4.330IDP00742 gene: tsf; elongation factor Ts SACOL1276 [Staphylococcus aureus subsp. aureus COL]  ali follow..  15  6..AKLVKELREKTGAGMMDCKKALTETD--DIDKAIDYLREK................. 44
9 -4.320IDP02028 gene: clpP; ATP-dependent Clp protease, proteolytic subunit ClpP [Coxiella burnetii RSA 493] CBU_0738 [Coxiella burnetii RSA 493]  ali follow..  15  149..DQLNQILAKHTGKDIERVEKDTNRD---------YFLTPEEAVEYGLIDSIFK.... 192
10 -4.280IDP90362 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_053 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  15  3..SERLKKLESEL-HDLTQWMQLVPKKEIERHQEEIRLLESK................. 43
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.