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Query: PF14979.6; TMM52_MOUSE/30-178; Transmembrane 52, from PfamA32U

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst RNCDPSDQCPPQARWSSLWHVGLILLAILLMLLCGVTASCVRFCCLRKQTHTQSHTPAAWQPCDGTVIPVDSDSPAHSTVTSYSSVQYPLGMRLPLYFGEPDPDSMVPPTYSLYASELPPSYDEVVKMIKAREEVAAPSEKTNSLPEALLast
1 -6.560IDP00256 Rio Bravo bat virus Envelope protein RBVgp1 [Rio Bravo virus]  ali follow..  67.DLKADARCPTQGEATM-WGNGCGLFGK------GSIVGCAKATCGANDIIKSYSYDSPKVKYVIGAEVHQGKLLTNNSTDRIVKTTLAESEKHTITIADYGSMDFT.......................................... 184
2 -6.230IDP00257 Modoc virus Envelope protein MODVgp1 [Modoc virus]  ali follow..  67.ETQIAARCPTQGDATL-WGNGCALFGK------GSIVGCAKVACNTANVMKTHIYEQQAVQYVVGIEVHRGEVIKANVSDKVIKASFSAEAE........................................................ 169
3 -6.130IDP00280 gene: N/A; Envelope (E) AAX48017_51-545 [Dengue virus 4]  ali follow..  16  67.NITTATRCPTQGEPYL-WGNGCGLFGK------GGVVTCAKFSCSGKITGNLVQIENLEYTVVVTVHNGDTHAVGNDTSNHGVTAT-PRSPSVEVKLPDYGELTLD.......................................... 184
4 -5.980IDP00252 St. Louis encephalitis virus Envelope protein [St. Louis encephalitis virus (strain MS1-7)]  ali follow..  15  67.TLSTVARCPTTGEAHN-WGNGCGLFGK------GSIDTCAKFTCKNKATGKTILRENIKYEVAIFV-SHGNYSEQIGKNQAARFTISPQAPSFTANMGEYGTVTID.......................................... 189
5 -5.970IDP00258 Montana myotis leukoencephalitis Envelope protein MMLVgp1 [Montana myotis leukoencephalitis virus]  ali follow..  10  67.GLKIATRCPTLGEAYL-WGNGCGLFGK------GSIVGCVKTTCKSSGIAKSYSYDIPKVKYVISTEVHKGELISGNVSASVVSAT-SEAEKHSMELEDYGRLEFT.......................................... 184
6 -5.900IDP04317 putative lipoprotein [Yersinia pestis CO92] YPO0512 [Yersinia pestis CO92]  ali follow..  10  11......................FILTGCVLLSGCSWFSSSSE---VVAAPLINPGPNGQAQPLKVCIIELNKEGWSPP---GLYQGTLCSGISVGGEVVSVTEYILAPTEVRQYSRDVPFEQERWWAIAAEFQEMSNGKSL........ 134
7 -5.830IDP00253 Yellow fever virus Envelope protein YFVgp1 [Yellow fever virus]  ali follow..  11  67.HVKINDKCPSTGEAHL-WGNGCGLFGK------GSIVACAKFTCAKSMSLFEVDQTKIQYVIRAQLHVGAKQENWNTDIKTLKFD--ALSGSQEVEFIGYGKATLE.......................................... 181
8 -5.800IDP92794 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG36653 [Vibrio cholerae O1 biovar El Tor]  ali follow..  41  24.................LWFFGLY---FALWLFCGIFVRCITCCCL....................................................................................................... 55
9 -5.430IDP00579 gene: tolR; colicin uptake protein TolR YPO1122 [Yersinia pestis CO92]  ali follow..  14  21......................LLDVLLVLLLIFMATAPIITQSVEVNLPDATDSKTVSSDDNPPVIVEVSGVGQYTVVVDHQRMELLPSEQVVAEA---QARLKTNPKTVFLIGGAKEVPYDEIIKA..................... 123
10 -5.260IDP00272 gene: N/A; Envelope (E) AF180817_281-775 [Dengue virus 1]  ali follow..  17  67.NTTTDSRCPTQGEATL-WGNGCGLFGK------GSLITCAKFKCVTKLEGKIVQYENLKYSVIVTVHTGDQHQVGNETTEHGTTATITPQAP........................................................ 169

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 2 2 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A. The challenge of protein structure determination--lessons from structuralgenomics. Protein Sci. 2007 Nov;16(11):2472-82.