Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF15935.5; I5B0B2_9DELT/91-316; RNase LS, bacterial toxin, from PfamA32U

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .
# Score Template Links and tools%idFirst HNNCITYRKIKQDDFELLLEYLDTEEAVKSESLEPYKTNNNHTIFKISSIYKDETTLTQYANQTILLQGRPLYIYNVIKSFINELIDFDQVVEIESDLYKIDLKPDVVREELESRLFAVYGRFDEKILKVMTPALSLMKIDVELEDYSCCIYPALRGLEGYIRMLLSEFSKEYKTVGRLGSLFDENKSYETMLFLKDDIKNDVVCKSLQNAYFMYVKHRHPLFHTDLast
1 -9.350IDP06126 hypothetical protein jhp0666 [Helicobacter pylori J99] NP_223384 [Helicobacter pylori J99]  ali follow..  9  63....LFLTDYANLFAAKVIKVSKEIDESLIPSYYKEKNLEVEDFFIISDEDFSLLRDQFLANSIAPNNHTYAIYGNNYVYPLPVRLKEERSYFLGDEKHYLSVYKSNEYLTMQENFKRLFYLLYPDSINNIIHAELELLQNDLLNDFTSIIVKYTKTLEYEIYTFAKQLKDFFAKKPNLGSI-----KHEKVQDHLEENLKRFINYPFQKSLSLIQNIRNKAVHQK 322
2 -6.390IDP90194 gene: CPXV200 CDS; CPXV200 protein AAM13639.1 [Cowpox virus (Brighton Red)]  ali follow..  15  16......................................................FLLRHYYDKRFIVYGRSNAILHNIYRLFTRC-----AVIPFDDIVRTMPNESRVQQWVIDTLNDIMMNERNVAVCVGTGLRFMEM----FFDYNKNNSNSKNSINNQLMYDIINSVSIILANERYRSAFNDNGIY..................................... 141
3 -5.700IDP04496 gene: thyA; thymidylate synthase [Vibrio cholerae O1 biovar eltor str. N16961] VC0675 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  124............DQLKKIVDDLSRGVDDRGEILNFYNPGEFHMGCL--SLLGDTLYLNSTQRSCDVPLGLNFNMVYVFLALMAQITGKKLAYHKIVNAHIYQDQLELMRDVQLKREPFPAPQFNPKIKTLQDLETWVTLDDFDVTGYQF--HDPIQY..................................................................... 279
4 -5.520IDP95397 set236a-062 [Undefined organism]  ali follow..  11  3.EVDYWSKGIGTKYTKMIFEFLKKERNADAVILDPHQDNPRAIRMYQKAPEHELHEGKKEDCYLMEYRYDDNETNVKAIKYIIEHSFDIKITSIKLIGNGNDSFAYEVNDNMIFKFPRHEKANENLLKEIEILQYLENKTTFNIPKVLYVCIACFTKING-LARFLKELHSSNYNKYQVDTIENYKKDYARLVELIFDKLDDNEKMVINNIYNSILSNNKSLVHND 271
5 -5.340IDP91202 gene: aroQ; 3-dehydroquinate dehydratase [Bifidobacterium longum DJO10A] BLD_0610 [Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088]  ali follow..  15  2.............................................................TKVIVVNGPNLGRLGVRQPDVYGRQDLDTLRKLCAEWGDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAHMVIDENLPLMEVHISNP............................................................. 107
6 -4.930IDP04183 sensor histidine kinase [Vibrio cholerae O1 biovar eltor str. N16961] VCA0257 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  278RERRFILQLLTHESLGFTVESLRSQFDELSPKAQESLWRLMADHQRLAQLSETSRHYLSPSHDTMARH--------QLSDFIEHCIEGFEVELHLKHDSILALPYYWLGLCVTNLLSNAKQHGVPPIR--LTVSVVAQTLRIEVEDCGEFPSFYQRLCKRLSR............................................................... 438
7 -4.650IDP00950 gene: wraB; TrpR binding protein WrbA STM1119 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  3.....................................................KILVLYYSM-----YGHIETMAHAVAEGAKKVDGAEVIIKRVPETMPPEIFAKAGGKTQNAPVATP----------------------QELADYDAIIFPTFGNMSGQMRTFLDQTG........................................................ 95
8 -4.640IDP95114 pullulanase-specific type II secretion system component K [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002917866 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  9  120....LALLGEPPLRASQIAAALGDWTDSDGQPRLNGAEDEVYMAQTPGYLAANQPMQDV--SELRLLAGMDAALYQRLLPFVCVQPDDASQAALLVALFPGDLTLQEAQQLLHNRPRTGWSSVAAFLAQPVHSARFIAAFSVVTGNLRFQLHSVLQQSGRTFTVVQRRYG........................................................ 308
9 -4.610IDP91722 gene: HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 isoform b [Homo sapiens] NP_112420 [Homo sapiens]  ali follow..  7  12QLRKLFIGGLSFET-ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV----REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF--------EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN........................................................ 171
10 -4.550IDP92787 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG09401 [Vibrio cholerae O1 biovar El Tor]  ali follow..  12  2.....................................................QHNTPYLPHQSLQLQSRLIKLYQNVGLFVPKLTFCFSVDNAETDTHYLNVGECNTYEKAALIAQQWLDDISDDDLLHIVQSVLSRGYTDGFSECVEGVRQADKLTS................................................................... 119
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.