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Query: PF16134.5; E9CUD7_COCPS/133-865; THO complex subunit 2 N-terminus, from PfamA32U

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LTDDRIKNWSSTGKQQVVEVGKEACSNVDTITLASLFQEVIQSAFECRIPPVEGGAVVKQIIGERSDSNDGDRTAPYLAFDSHSIFLDTLSILTDADSSRENLRPLAFATGISPSLMRLQLDTPLLQALGLIRDTFGRMGIRKQTNILYRQSNYNLLREESEGYSKLLTELFTTSNNEPPSSEVVEDTFERVKAMIGAFDMDVGRVLDVTLDVFAAVLVKQYRFCVKFLRASSWWPKEDNAPEGGIGLGLPKWALPGSPGWSTTDEEREEALRLNEHRDRLFWDRAKQVGIKAFFEIGRSLASDSDNHMLVSDIDVETRDETQKWIEQTGTLPPKGNRVAAQLLGFKLRFYSSDARNATDVLPDNLIYLAALLIKVGFISLRDLYPHLWRPDEEMEVLKEEKMKEKAEREKAGRRGAGMMNALMTAGALADDTLTLPARSRGLETRSATPAKEQEQDKDKTAPQKTEEKEQLPEPADQKVLLLKSLLAIGALPESLYILGRFPWLLDGYPELPEYIHRILHYCLHKVYQSVQPLPSRSELRDRKKIVGSEQGAVSQGRVRLSDAAPQRVLRWALLDKQDNDGTDYRFYWDDWTDSIPVCQSIDDVFALCSSFLNLSGVKIGQDPSLLTKLARIGKHSLKEDVSESNRTRWMDLCRRLLVPALSLTKNNPGVVNEVFELLNYFPQHVRFSIYAEWYFGQTSRLPDIKSAFDQARFETKDALKRLSKTNVRPMARLast
1 -5.490CPX_91673_04225 Complex of CD44_HUMAN with IPAB_SHIFL [Undefined organism]  ali follow..  12  722..DQFMTADETRNLQNVDMKIGVXMHNVSTTTTGFPLAKILTSTELGDNTIQAANDAANKLFSLTIADLTANQNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGN-------LIQILGEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLS--ELDP--------ESPEKKKLSREEIQLTIKKDAAVKDRTLIEQKTLSIHSKKSMQLEKEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATFIQLVGKNNEESLK--DLALRKTEMERKSDEYAAEVRKAEELNRVMVGKILGALLTIVSVVAAAFSGGASLALAAVLALMVTDAIVQAATMEQALNP----MKAVIEPLIKLLSDAFTKMLEGLGVDS--------------------------------------------------------KKAKMIGSIL--GAIAGALVLVAAVVLVATAAAKLAENIGKIIGKTLTDLIPK---------------------------------------------------------FLKNFSSQL------DDLITNAVARLNFLGA--AGDEVISKQIIHLNQAVLLGESVNSATQAGGSVASAVFQNSASTNLADLTLSKYQVEQLSKY-ISEAIEKFGQLQEVIADLLASMSNSQANRTDVAKAILQQTTA........ 1323
2 -5.410IDP95378 set238a-015 [Vibrio cholerae]  ali follow..  259...................................DVSDLFVTFTAQVAKRTKAVGQMAELTRTLGRIRLEEKEIPDFVKQDPIRILELERAITEYCATAKLAEIESYALASEGLSPSGNYAPMQQRAEQKLAELKTLYRFEPTSAQMRKWRKKDNSFIDEVRWADLDNFLVEHYTELKGLDEQIKQHYAQFMSAFNQLGLDPLLFMDNQDEVQQAYLLALTSQFLVVVTQVNHDEKSLEILKKDLSFDSPKNLMFSLQANQAINNHIQGFSTAFLSTSNPSDMVAFATAIANWDTFTGDERIQEKAWFKRWIEPAQS---------SFGALKKAVANQAKESWQAVMELLFPYQNQPKGGTPSLLANLRLLLVESLVREEAVL-------NPKYAAELKQFETKLNAILQEMNDALELKPGNVSPKNHQIATAQSAQRKLGQLLSSELPMMLTLKNQAAMNTFQQSVNEKLSALSKNVLGGLLFALNLWNTMTVLENIRY-----PSKNPALGEAIYATGNTIVVAGAISAGRAWVTIVDQGLLKESLKVALKDTAGMTMQDALKTFAKSIALVATVGMIASGLE--WESWGKFNDSSKTDLERFGYLLKAGATGAQALIFAIQLGVYGVSRFIGFGTIAA----------ISAGWMAAGFAVIGIVYLIGVILTNVFKRSELE-IWLLKSTWGKEVGQELTELERLLHRPSLRLSQVTQRKAAQ....... 960
3 -5.360IDP91942 immunoglobulin A1 protease [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007536 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  1219.ANKLLLHYKDDLSEKLDLKYQNDFAKLAEYSLGNT------LLYTPNQFLYDQTSIIKQVLPDLQKVDYHSEAIRKTL-VKQTELYLEDQFAKTKQQLEDSLKKLLSAD--------AGLASANPVTEGYLVDKIKRNKEALLLGLTYLERWYNFFGKGNASPLDTLIELGKSGFNNLLAKNNVDTYGISLASQHGTTDLSETKAYIVVYDRITSNTWKYRNMVLPLLTLPERSVFVISTMSSLGFGAYDRYRSSDHKAGKALNDFVEENARETAKRQRDH--------YDYWYRILDEQSREKLYRTILLYDAYKFGDDTTSGKATAEAKFDSSNPAMKNFFGPVGNKVVHNQHGAYATGDGVYYMSYRMLDKDGAITYTHEMTHDSDQDIYLGGYGRRSGLGPE----------------FFAKGLLQAPDQPSDATITINSILKHSKSDSTEGSRLQVLDPTERFQNAADLQNYVHNMFDLIYMM-EYLEGQSIVNKLS------VYQKIEALRKIENQYLTDPADGNDVYATNVVKNLT------------------------------------------------EDEAKKLTSFDSLI----------------DNNILSA---------EYKAGTYERNGYFTI--KLFAPIFSALSGEKGTPGDLFELLAAKGFKDGMVPYNQYEEDAKQQGQTI-YGKERGLVTDELVLKKVFDGKYKTWA. 1906
4 -5.270IDP04278 conserved hypothetical protein [Yersinia pestis CO92] YPO0504 [Yersinia pestis CO92]  ali follow..  10  4.....................................................................................................................................................................................................................................................................................................................ESFLALYNEELR---YLREDGQRFAHMHPQVAQHLGL-------HADGVLDPFVERLLEGTAFLSSRIQQRLNNEHPEFA--LQMLGRLAPLWYTPLPSIATIAMVPDLTSPQWHSRVVLPKGSRVTLSDSSLNNRLANFSTGRTENAECASTPPAYLPLSVASQLQAGQAHLRLRLTTQGVASLSELDFAPMNLTLAGGIIQSNQLITTLLNNTLHIVLWANTDGKPLVKVLTKEHLRQ---------------------------------------LDEQEALLPVAISEMPGNRLLREYFAAPSRFFDLELHGLNDFLQQGDGVLDQRPLHLIDRVTGNDFRLFATPIINLFKRRC-------SPVLINGEHTEYPVIVDPLNPRLYEVHHVLGVNGLLSEGGSVQFSSL.......... 377
5 -5.200IDP00166 gene: rtxC; RTX toxin activating protein VC1450 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  19........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IGGVMLLSQHSPLHRRYVVAEWLQRILPAFELDEHGRPIAFCNWAFVS--QIRDELL--SDWRSGQQIYIPEMIAPFGHGREVVNDLRRRVFLPW...... 125
6 -5.150IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  13  8..................................................................................................................................................................................................................................................................................................................................................................................ALLISLIMI-LSMVVSTIYPTVSYASELGEN--SQIQSGSTNSSTGEEKESDNKKPEQTPEKDKATDNKKPEQTPEEEKPTDNKKPEQTPEEDKSTDNKKPEQTPEGEK.............................................................................................................................................................................................................................................................. 113
7 -4.920IDP91706 gene: STAT2; signal transducer and activator of transcription 2 isoform 1 [Homo sapiens] NP_005410 [Homo sapiens]  ali follow..  8......................................................................................................................QNLDSPFQDQLQLYSHSLLPVDIRQYLAVWIEDQNWQEAALGSD-FFHFLDQLNYECGRCSQDPESLQHNLRKFCRDIQPFSQDPTQLAEMIFNLLLEE-QHEIESRILDLRAMMEKLVKSISQLKDQQDVFCFRYKIQAKGKTPSLDPHQTKEQKILQETLNELDKRRKEVLDASKALLGRLTTLIELLLPKLEEKACIRAPIDHGLEQLETWFTAGAKLLFHLLSCLVSYQDDPLTKGVDLRNAQVTELLQRLLHRAFVVETQPCMPQTPHRPLILKTGSKFTVRTRLTVEVSIDRNPPQLQGFRKFNILTSNQKTLTPEKGQSQGLIWDFGYLTLVEQRSGGSGKGSNKGPLGVTEELHIISTVKYTYQGLKQELKTDT-LPVVIISNNQLSIAWASVLNLLSPNLQNQGPALSWQFSSYVGRGLNSDQLSMLRNKLFGQNCRTEDPLLSWADFTKRESPPGKLPFW--TW----------------------------------LDKILELVHDHLKD---------WND---GRIMGFVSRSQERRLLKKT---LL-------RFS----------SSEGGITCSWVEHQDDDKVLIYSVQPYTKEVLQ. 637
8 -4.820IDP00560 gene: hemY; putative protoheme IX biogenesis protein YPO3852 [Yersinia pestis CO92]  ali follow..  38........................................................................................................................................................................................................................................................................................................................................................................TTSVTGLAIMLVLLLVAFFIVEWVLRRIFRTGARTRGWFLGRKRTRARNQMKAALIKLAEGDFLQVEKLLTRNADHAEQPMVNYLLAAEAAQQRGDEFRTNQYLERAAEVADGDQLPVNITRVRIQLAQGHIHAARHGVDRLLDQAPRHPEVLRLAEQAYLRSLLDILPAMSKTQIHTPEEVAALEQQAYIGIMNQCMADEGSEGLKRWWKDQSRKVRNEIPLQVAL-----AEHLIECDDHDVAQKIILDSLKLALLIPRLKAGNPEPLEKSLRQQIKQHGATPLL--------NSTLGQLMLKHGEWEKASEAFKALAQRPDGYDYAWLADALDKLRREGLLLTLRQNGESSALTKLIH............ 406
9 -4.760IDP06032 beta-adaptin-like protein, putative [Toxoplasma gondii ME49] EEB01577 [Toxoplasma gondii ME49]  ali follow..  11  27..PQFFVDQKRGELYELRQVLRSLPTERDVTKQRDALKKLIAYMTVGL----DVSRLFADVVMLASTADLVQKKMIYQYL---------TNYADTNPSLSLLAINTFQKDCNDEDPRLRGLALRSL--CSLRLSCMLEYIEPAARKGASDPSPY-VRRAAVMGMLKVCKLLQELMATDEESSQRIDEIRQRLHEALF--DDDPQNAICALNELEAETTKKIATHFLNRIKRFSEWGVCVILNLVASY----------------QPETEEEAFDVMNILDDKLKSSSAAVVLGCANCFLELTRGNAERLKPPLLTLATTGYPEIAHLRHILLIVQTGGEDAVEIFAGESRQLFCRYTDPSYLKATKLQTLAAIATENNCVDMAEIREYVCDADADIARQSLAALGVIACRIPSAA--------------------------------------------------------------DDVVTLLLSFVEMLADFLASAAFVILRDILRKYTKMISRLVEAIRIYALRL-------------------------------------------------------------------------SDGEGVAAVVWMLGEFSKNIDDAPYILEEIVD----RFDEEPPV---------VRMELLTAATFFNYPGEMQPILGKLLEKPDIHDKALFYYRFLKTSLQDARRILSTPLPPAEELESSADRELSERL..... 599
10 -4.710IDP91716 gene: STAT1; signal transducer and activator of transcription 1-alpha/beta isoform alpha [Homo sapiens] NP_009330 [Homo sapiens]  ali follow..  12  8......................................................................................................................QQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLEKQDWEHAANDVSFATIRFHDLLSQLDDQYSRFSLENNFLLQHNNLQDNFQEDPIQMSMIIYSCLKEELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLML-DNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSQNWFTIVAESLQQVRQQLKKLLEQKYTYEHDPITKNKQVLWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKVKVLFDKDVNERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEGTRTNEGPLIVTEELHSLSETQLCQPGLVIDLETTS-LPVVVISNVQLPSGWASILWYNM---WAQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGPNASPDGLIPWTRFCKENINDKNFPFW--LW---------IESILELIKKHLLIMG-FISKERELLKDLLRFSESSREGAITFTWVER--ELSAVTFPDIIRNYKVMAAENIPENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTGYIKTELISVSEVHPSRLQ. 718

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.