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Query: PF00015.21; MCPC_SALTY/326-483; Methyl-accepting chemotaxis protein (MCP) signalling domain, from PfamA32U

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TGLAKTASETARKGGRVVDNVVSTMNDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEMDSVTLast
1 -18.300sp|Q9Y6N6|LAMC3_HUMAN(removed signalp:1-19) Laminin subunit gamma-3 OS=Homo sapiens GN=LAMC3 PE=2 SV=3  ali   10  99LTQASSSVQAATVTVMGARTLLADLEGMKKADSVSDRLLADTRKKTKQAERMLGNAAPLSSSAKKKGREAEVLAKDSAKLAKALLRERKQAHRRASRLTSQTQATLQQASQQVLASEARRQELEEAERVGAGLSEMEQQIRESRISLEKDIETLSEL. 269
2 -17.400sp|P11047|LAMC1_HUMAN(removed signalp:1-35) Laminin subunit gamma-1 OS=Homo sapiens GN=LAMC1 PE=1 SV=3  ali   11  37...............NTIEETGNLAEQARAHVENTERLIEIASRELEKAKVAAANVSVTQPESTGDPNNMTLLAEEARKLAERHKQEADDIVRVAKRTLAGENQTAFEIEELNRKYEQAKNISQDLEKQAARVHEEAKRAGDKAVEIYASVAQLSPLD 193
3 -17.000sp|Q6AZY7|SCAR3_HUMAN Scavenger receptor class A member 3 OS=Homo sapiens GN=SCARA3 PE=2 SV=1  ali   8  214..................YDVKAAVHQINFTVGQTSEWIHGIQRKTDEETLTLQKI---VTDWQNYTRLFSGLRTTSTKTGEAVKNIQATLGASS-----------QRISQNSESMHDL....................................... 300
4 -16.400sp|Q13753|LAMC2_HUMAN(removed signalp:1-21) Laminin subunit gamma-2 OS=Homo sapiens GN=LAMC2 PE=1 SV=2  ali   12  79...............MTVERVRALGSQYQNRVRDTHRLITQMQLSLAESEASLGNTNIPASDHYVGPNGFKSLAQEATRLAESHVESASNMEQLTRETEDYSKQALSLVRKA-AVVQGLVEKLEKTKSLAQQLTREATQAEIEADRSYQHSLRL.... 230
5 -16.300sp|P07942|LAMB1_HUMAN(removed signalp:1-21) Laminin subunit beta-1 OS=Homo sapiens GN=LAMB1 PE=1 SV=2  ali   12  130RNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSQQLQNLTEDIRERVESLSQVEVILQHSAADRAEMLLEEAKRASKSATDVKVTADMVKEALEEAEKAQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELKRKA 291
6 -14.500sp|Q5KU26|COL12_HUMAN Collectin-12 OS=Homo sapiens GN=COLEC12 PE=1 SV=3  ali   9  64VQQRNLITNLQRSVDDTSQAIQRIKNDFQNLQQVFLQAKKDTDWLKEKVQSLQTLAANNSALAKANNDTLEDMNSQLNSFTGQMENITTISQANEQNLKDLQDLHKDAENRTAIKFNQLEERFQLFETDIVNIISNISYTAHHLRTLTSNLNEV.... 217
7 -13.100sp|Q13751|LAMB3_HUMAN(removed signalp:1-17) Laminin subunit beta-3 OS=Homo sapiens GN=LAMB3 PE=1 SV=1  ali   13  140...............ATIQEVSEAVLALWLPT-DSATVLQKMNEIQAIAARLPNVDLVLSQTKQDIAR-----ARRLQAEAEEARSRAHAVEGQVEDVVGNLRQGTVALQEAQDTMQGTSRSLRLIQDRVAEVQQVLRPAEKLVTSMTKQLGDFWT.. 274
8 -12.600sp|P55268|LAMB2_HUMAN(removed signalp:1-32) Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2  ali   12  124EQANQELQELIQSVKDFLNQEGADPDSIEMVATRVEQIQHLAGAIAERVRSLADVDAILARTVGDVRR-----AEQLLQDARRARSWAEDEKQKAETVQAALEEAQRAQGIAQGAIRGAVADTRDTEQTLYQVQERMAGAERALSSAGERARQLDA.. 283
9 -12.400sp|Q9H1K6|MESD1_HUMAN Mesoderm development candidate 1 OS=Homo sapiens GN=MESDC1 PE=1 SV=1  ali follow..  12  158...............HEVEQGCAVLRATPLADMTPQLLLEVSQGLSRNLKFLACALASDKSRDRFSREQFKLGVKCMSTSASALLACVREVKVAPSELARSLGRAAAVSAEGKAVQTAILGGAMSVVSACVLLTQCLRDLAQHPDGGAKMSDHRERLR 327
10 -11.300sp|Q9Y4G6|TLN2_HUMAN Talin-2 OS=Homo sapiens GN=TLN2 PE=1 SV=4  ali   10  110.....................VVNLTAGDPADTDYTAVGCAITTISSNLTEMSKGVKLLAALMDDEVGSGEDLLRAARTLAGAVSDLLKAVQPTSGEPRQTVLTAAGSIGQASGDLDVLMSLAKAVANAAAMLVLKAKNVAQVAEDTVLQ........ 252
11 -9.460sp|P11047|LAMC1_HUMAN(removed signalp:1-35) Laminin subunit gamma-1 OS=Homo sapiens GN=LAMC1 PE=1 SV=3  ali   12  72...YEDLREDMRGKELEVKNLLEKGKTEQQTADQLLARADAAKALAEEAAKKGRDTLQEANDILNNLKDFDRRVNDNKTAAEEALRKIPAINQTITEANEKTREAQQALGSAAADATEAKNKAHEAERIASAVQKNATSTKAEAERTFAEVTDLDN.. 224
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;