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Query: PF02683.15; O66942_AQUAE/8-266; Cytochrome C biogenesis protein transmembrane region, from PfamA32U

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AFLGGLLSFLSPCILPIIPAYLSYISGVGVSDVETQKGKVNWKVFFSALYFVLGFTLVFTGLGASATFVGQLLHDYQEWIIRVGSGLVIFFGLHFAGVFLWKHFLKVYIPIGILIPVLYFLKLLSWNEFFNLMFAYAVVLILYLVKAHEFLYRQLKIEAKAEISYLGAFLMGVVFAFGWSPCIGPVLGSILFLASQQETVAKGALLLFVYSIGLGIPFLLAGLLFSLFLNFVRSFSRYFKYVEIAGGVLLVSLGLLLALLast
1 -9.630sp|Q92833|JARD2_HUMAN Protein Jumonji OS=Homo sapiens GN=JARID2 PE=1 SV=2  ali   18  7.....FLTFL--CL-PALPNSMVYFGSSQDEEEVEEEDDETEDVKTAT................................................................................................................................................................................................................... 49
2 -8.530sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1  ali   18  7..VSDISFLPDPCALP--------------EQQKKRCLNEKEKLVYAPLSGVGGVLAVYVDLGGSHVFQDEVGPTHELVQSLIS............................................................................................................................................................................... 78
3 -8.520sp|Q9HC07|TM165_HUMAN(removed signalp:1-33) Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1  ali follow..  12  59GFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYN-------------RLTVLAGAMLALGLMTCLSVLFGYATTV-RVYTYYVSTVLFAIFGIRML-------REGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDVETGTSITVPQKKWLHFISPIFVQALTLTFLAEWG-----SQLTTIVLAAREDPYGVAVGGT------VGHCLCTGLAVIGGRMIAQKISV-----RTVTIIGGIVFLAFAFSALF 284
4 -8.420sp|Q9UBN1|CCG4_HUMAN(removed signalp:1-27) Voltage-dependent calcium channel gamma-4 subunit OS=Homo sapiens GN=CACNG4 PE=2 SV=1  ali follow..  13  34LTHSGLWRV---CCIGIYKGHCFRINHFPEDNDYDHDSSEYLLRIVRASSVFPILSTILLLLGGLCIGAGR-IYSRKNNIVLSAGILFVAAGLSNIIGIIV-----------------------------------------------YISSNTGDPSDKRDEDKKNHYNYGWSFYFGALSFIVAETVGVLAVNI................................................................ 178
5 -8.330sp|Q8IUH8|IMP5_HUMAN(removed signalp:1-21) Signal peptide peptidase-like 2C OS=Homo sapiens GN=SPPL2C PE=1 SV=3  ali   20  8AYAVGLLVTFQPALLYLVSSTLLLAVAACRQELSL................................................................................................................................................................................................................................ 53
6 -8.320sp|Q9Y698|CCG2_HUMAN(removed signalp:1-27) Voltage-dependent calcium channel gamma-2 subunit OS=Homo sapiens GN=CACNG2 PE=2 SV=1  ali follow..  11  31MTHSGLWRT---CLEGNFKGLCKQIDHFPEDADYEADTAEYFLRAVRASSIFPILSVILLFMGGLCIAASE-FYKTRHNIILSAGIFFVSAGLSNIIGIIV-------------------------------------------------YISANAGDPSKSDSKKNSYSYGWSFYFGALSFIIAEMVGVLAVHM................................................................ 173
7 -8.290sp|Q9H7V2|TM90B_HUMAN Transmembrane protein 90B OS=Homo sapiens GN=TMEM90B PE=2 SV=1  ali follow..  12  182.LGLSVFSML--CFWPL--GIAAFYLSHETNDLHQASTSSRRALFLAVLSITIGTGVYVGVAVALIAYLSK............................................................................................................................................................................................ 254
8 -8.100sp|Q96Q45|AL2S4_HUMAN Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 4 protein OS=Homo sapiens GN=ALS2CR4 PE=1 SV=1  ali follow..  10  241.....VALTVHRAFRMIGLFSHGFLAGCA----------------------VWNIVVIYVLAGDQLSNLSNLLQQYKTLAYPFQSLLYLLLALSTISAFDRIDFAKISVAIRNFLALDPTALASFLYFTALILSLSQQMTSDRIHLYTPSSVNGSLWEAGIEEQILQPWIV-----VNLVVALLVGLSWLFLSYRPGMDLSEELM...................................................... 413
9 -7.970sp|Q9NV92|NFIP2_HUMAN NEDD4 family-interacting protein 2 OS=Homo sapiens GN=NDFIP2 PE=1 SV=2  ali follow..  18  228...................................................................................................................................................................GNDGIFMLAFFMAFIFN-----WLGFCLSFCITNTIAGRYGAI-----CGFGLSLIKWILIVSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYL 315
10 -7.950sp|Q68CP4|HGNAT_HUMAN Heparan-alpha-glucosaminide N-acetyltransferase OS=Homo sapiens GN=HGSNAT PE=1 SV=2  ali   13  2....GL--TVADLVFPWF-----FIMGSSIF-LSMTSILQRGCSKFRLLGKIAWRSFLLICIGIIIVNPNYCLGPLSWDKVRIPGVLQRLGVTYFVVAVLELLFAKPVPEHCASERSCLSLRDITSSWPQWLLILVLEGLWLGLTFLLPVPGGKYPNCTGGAAGYIDRLLLGDTINSIVMAFLGVQAGKILLYYKARTKDILIRFTAWCCILGLISVALTKVSENEGFIPVNKNLWS-LSYVTTLSSFAFFILLVLYPV 288
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24