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Query: PF02961.14; C3XZ01_BRAFL/2-89; Barrier to autointegration factor, from PfamA32U

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .
# Score Template Links and tools%idFirst SSTSQKHRDFVGEPMGDKPVTALAGIGGTLGGRLEEEGFDKAYVVLGQFLVLKKNEELFKEWLKSACNANSKQSGDCYTCLKEWCDAFLast
1 -62.100sp|Q9H503|BAFL_HUMAN Barrier-to-autointegration factor-like protein OS=Homo sapiens GN=BANF2 PE=1 SV=1  ali follow..  39  2DNMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLMHKNEAEFQRWLICCFGATECEAQQTSHCLKEWCACF 89
2 -61.600sp|O75531|BAF_HUMAN Barrier-to-autointegration factor OS=Homo sapiens GN=BANF1 PE=1 SV=1  ali follow..  75  2.TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGANAKQSRDCFGCLREWCDAF 88
3 -6.920sp|Q9UBT6|POLK_HUMAN DNA polymerase kappa OS=Homo sapiens GN=POLK PE=1 SV=1  ali   24  39.......RQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQ........................................ 79
4 -6.750sp|Q9BZ98|TTY12_HUMAN Putative transcript Y 12 protein OS=Homo sapiens GN=TTTY12 PE=5 SV=1  ali follow..  14  3.DPETRHKAFLKAPWQNSTITFVPGLAHYSSVQVPRRGAILPMLYALCYVKMPSFQHGPGRMYHLTCDWPRKMSLSCHVCRAHFRD.. 90
5 -6.660sp|Q9UBZ9|REV1_HUMAN DNA repair protein REV1 OS=Homo sapiens GN=REV1 PE=1 SV=1  ali   22  37..........VDDFIRGQLVTNLPGVGHSMESKLASLGIKTCGDL........................................... 71
6 -6.590sp|Q9H0U6|RM18_HUMAN 39S ribosomal protein L18, mitochondrial OS=Homo sapiens GN=MRPL18 PE=1 SV=1  ali follow..  14  104.SASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMTEG-GVVLREPQRIYE......... 180
7 -5.920sp|Q9UBT6|POLK_HUMAN DNA polymerase kappa OS=Homo sapiens GN=POLK PE=1 SV=1  ali   21  189.......RQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQ-LSLLFSETSWHYFLHISLGLGSTHLTR............ 259
8 -5.850sp|Q9UBZ9|REV1_HUMAN DNA repair protein REV1 OS=Homo sapiens GN=REV1 PE=1 SV=1  ali   22  187..........VDDFIRGQLVTNLPGVGHSMESKLASLGIKTCGDL........................................... 221
9 -5.800sp|Q03468|ERCC6_HUMAN DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1  ali   20  223...CQQAGGILGDEMGGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIV---TTVMHQWVKE---------------FHTWWPPF 292
10 -5.690sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1  ali   13  3DDVKVVEKYFSGPAITLENTRVVSQSLQHYLELGRQ----ELFKILHSILLNGETREAALSYMAAVVNANMKKAQMQTDDRLVSTDGF 86
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.