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Query: PF03400.13; Q32H87_SHIDS/20-150; IS1 transposase, from PfamA32U

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst VIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQLast
1 -7.910sp|Q2TAC2|CCD57_HUMAN Coiled-coil domain-containing protein 57 OS=Homo sapiens GN=CCDC57 PE=2 SV=2  ali   14  2..LSMAKSQVAAKLQETEQAL-------QEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEISKDFPSS-------EIQRLREQNTSLRNAIAQMRKEMEALSHQI................. 99
2 -7.470sp|Q14244|MAP7_HUMAN Ensconsin OS=Homo sapiens GN=MAP7 PE=1 SV=1  ali   13  4...............KQKHNRWSWGGSLHGSPS------PDRRSVSTMNLSKYVDPVISKRLSSSSATLLNSPDRARRLQLSPWESSVVNRLLTPTHSFLAR-SKSTAALSGE.................. 99
3 -7.240sp|Q9NXP7|GIN1_HUMAN Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens GN=GIN1 PE=2 SV=3  ali follow..  7  142...LVTVDLMGPFHTSNRSHVYAIIMTDLFTKWIVILPLCDVSASEVSKAIINI-----QKIIMDQRDEFIQQIKQIVISHTSGTVNPTESTPNTIKAFLSKH------CADHPNNWDDHLSAVSFAFN.. 273
4 -7.220sp|P63136|POK17_HUMAN HERV-K_11q22.1 provirus ancestral Pol protein OS=Homo sapiens PE=3 SV=1  ali   20  45.......NALWQ-VPSFGRLSYVHVTVDTYSHFIWATCHGESTSHVKKHLLSCFAVMGVEKIKTDNGPGYCSKAFQKSHTTGSQGQAIVERTNRTLKTQLVKQKEGGDSKECTTPQMQLNLALYTLNFL.. 183
5 -7.210sp|Q6ZNG9|KRBA2_HUMAN(removed signalp:1-16) KRAB-A domain-containing protein 2 OS=Homo sapiens GN=KRBA2 PE=1 SV=1  ali follow..  7  247....CQVEILDMQSSADGEFKFILYYQDHSTKFIILRPLRTKQAHEVVSVLLDI-----SVLDSDSGVEFTNQVVHELNEL-GQSQGSLEGASRDVKNMISTWMQ-----SNHSCHWAKGLRFMQMVRN.. 380
6 -7.190sp|Q9UQG0|POK20_HUMAN HERV-K_3q27.3 provirus ancestral Pol protein OS=Homo sapiens PE=2 SV=2  ali   20  47.......NALWQ-VPSFGRLSYVHVTVDTYSHFIWATCQGESTSHVKKHLLSCFAVMGVEKIKTDNGPGYCSKAFQKSHTTGSQGQAIVERTNRTLKTQLVKQKEGGDSKECTTPQMQLNLALYTLNFL.. 185
7 -7.180sp|Q9QC07|POK7_HUMAN HERV-K_1q23.3 provirus ancestral Pol protein OS=Homo sapiens PE=3 SV=2  ali   18  55...........HMYLHLGRLSYVHVTVDTYSHFMATCQTGESTSHVKKHLLSCFAVMGVEKIKTDNGPGYCSKAFQKSHTTGSQGQAIVERTNRTLKTQLVKQKEGGDSKECTTPQMQLNLALYTLNF... 184
8 -7.150sp|Q9BXR3|POK2_HUMAN HERV-K_7p22.1 provirus ancestral Pol protein OS=Homo sapiens GN=ERVK6 PE=2 SV=2  ali   20  47.......NALWTHVPSFGRLSYVHVTVDTYSHFIWATCQGESTSHVKKHLLSCFAVMGVEKIKTDNGPGYCSKAFQKSHTTGSQGQAIVERTNRTLKTQLVKQKEGGDSKECTTPQMQLNLALYTLNFL.. 185
9 -7.140sp|P63135|POK12_HUMAN HERV-K_1q22 provirus ancestral Pol protein OS=Homo sapiens PE=3 SV=1  ali   20  47.......NALWQ-VPSFGRLSYVHVTVDTYSHFIWATCQGESTSHVKKHLLSCFAVMGVEKIKTDNGPGYCSKAFQKSHTTGSQGQAIVERTNRTLKTQLVKQKEGGDSKECTTPQMQLNLALYTLNF... 184
10 -7.120sp|P10266|POK10_HUMAN HERV-K_5q33.3 provirus ancestral Pol protein OS=Homo sapiens PE=3 SV=2  ali   20  47.......NALWQ-VPSFGRLSYVHVTVDTYSHFIWATCQGESTSHVKKHLLSCFAVMGVEKIKTDNGPGYCSKAFQKSHTTGSQGQAIVERTNRTLKTQLVKQKEGGDSKECTTPQMQLNLALYTLNFL.. 185
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;