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current user: public |
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| Query: PF08066.12; V2XRV5_MONRO/27-118; PMC2NT (NUC016) domain, from PfamA32U |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 | |||||||
| # | Score | Template | Links and tools | %id | First | KATRNSMLLPVDIPYHRSMDSEFSKELDNFSARVISLANKLLTLAGTVDASGKGKGKLQNEDDVVDNFHALVVDSMDQMLERTDICLDEIMG | Last |
| 1 | -29.000 | sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2 | ali | 23 | 45 | AVTKASGGLPDEYDFYRSF-PGFQAFCETQGDRLLQCMSRVMQYHGCRSNIKDR-----SKVTELEDKFDLLVDANDVILERVGILLDEASG | 133 |
| 2 | -5.870 | sp|Q8WTW3|COG1_HUMAN Conserved oligomeric Golgi complex subunit 1 OS=Homo sapiens GN=COG1 PE=1 SV=1 | ali | 14 | 54 | .SMKAQAISPCVQNFCSALDSKLKVKLDDLLAYLPSDDSSLPKDVSPTQAKSSAFDRYADAGTVQEMLRTQSVACIKHIVDCIRAELQSIE. | 143 |
| 3 | -5.720 | sp|Q494R4|CC153_HUMAN Coiled-coil domain-containing protein 153 OS=Homo sapiens GN=CCDC153 PE=2 SV=2 | ali follow.. | 12 | 75 | GARSEGKAIYAEMS-CHALQEDMQTRSKQLEEEVKGLRGQLEACQREAAAAREEAEQALGERDMEAKYEEILHDSLDRLLAKLRAI...... | 173 |
| 4 | -5.620 | sp|Q13503|MED21_HUMAN Mediator of RNA polymerase II transcription subunit 21 OS=Homo sapiens GN=MED21 PE=1 SV=1 | ali follow.. | 19 | 56 | ....................QLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIA. | 126 |
| 5 | -5.560 | sp|Q8IUR6|CE041_HUMAN UPF0474 protein C5orf41 OS=Homo sapiens GN=C5orf41 PE=1 SV=2 | ali | 16 | 23 | ....SEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFLSLEDCK----------------DIENLESFTDVLDN-WEQWDTYCEDLT. | 99 |
| 6 | -5.540 | sp|Q8TDX9|PK1L1_HUMAN Polycystic kidney disease protein 1-like 1 OS=Homo sapiens GN=PKD1L1 PE=2 SV=1 | ali | 8 | 188 | .................TLPQKRKSFQSKSFVRLKDVTAYMWEKVLTFLRLETPKLEEAEMVENHNYYLDEFANLLDELLMKINGLSDSLQ. | 261 |
| 7 | -5.250 | sp|Q7Z3T8|ZFY16_HUMAN Zinc finger FYVE domain-containing protein 16 OS=Homo sapiens GN=ZFYVE16 PE=1 SV=3 | ali | 25 | 2 | .................................................................DSYFKAAVSDLDKLLDDFEQNPDE... | 25 |
| 8 | -5.240 | sp|Q155Q3|DIXC1_HUMAN Dixin OS=Homo sapiens GN=DIXDC1 PE=1 SV=2 | ali | 15 | 195 | QSMEENQDLKKELLKCKQIKDALQQRLTQQDTSVLQLKQELLRANMDKDELHNQNVDLQRKLDERNRLLGEYLGQKDRLLQQHQAKLEE... | 293 |
| 9 | -5.240 | sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1 | ali | 14 | 202 | ....ANDTIPSE-SYISAVQAAHLGTLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLLESTESVAEISSNSLERILG | 289 |
| 10 | -5.220 | sp|Q53H47|SETMR_HUMAN Histone-lysine N-methyltransferase SETMAR OS=Homo sapiens GN=SETMAR PE=1 SV=1 | ali | 13 | 153 | ....SPDLLPTNYHVFKHLNNFLQGKRFHNQQDAENAFQEFVESQST----------------------DFYATGINQLISRWQKCVDC-NG | 217 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26; |