current user: public

If you have questions about the server, please let us know.

Query: PF09847.9; O29125_ARCFU/30-435; Membrane protein of 12 TMs, from PfamA32U

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .
# Score Template Links and tools%idFirst SLRVQVAKSFFIMTFLGSFLCWVAFISSGLGLSLIFTLSLVFSQIYPAQNIAISASSRVFEPLRYLPVRFSERMLVVFFIDSINILAFATPTIAVLMVKNLYFGLYSLLWIIAAILLGYSMVFLYYALFGVKVRSGFSKSVLAGILFFAVLVFALRRFQEIPDLTPYLTPHLLLLSYAASSATIKLSTGRVWRSILNPEIVEVKGSSRLSSGSPLRAMLIKDFRLILRKNALFPLIVPLVIVMPNVVSIANMPNLSIFIITTISTLSTIDLRIIGNLENVDFLRMLPLSKRGFVMSKACLIFVISFAASLPAGSIAFIVSQNPFYLFMAFAIPAIVSMLSSLIIFWQKGEEIYFPEVGFLKWIGLLLVNFGAVYAVLSPRFILSQPVADIISSVLTLLAMTALFEKLast
1 -6.530sp|Q8IYB8|SUV3_HUMAN(removed signalp:1-18) ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Homo sapiens GN=SUPV3L1 PE=1 SV=1  ali   1.........................................................................................................................................................................................................GRAGRFSSR-EGEVTTMNHEDLSLLKEDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAEL-IQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLELDLYLWLSY---RFMDMFPDASLIRDLQKELDGIIQDGVHNITKL..... 208
2 -6.110sp|Q14679|TTLL4_HUMAN Tubulin polyglutamylase TTLL4 OS=Homo sapiens GN=TTLL4 PE=1 SV=2  ali   31  2..................................................................................................................................................................................................................................................................................................................................................................P------W--VLEVN-------ISPSLHSSSPLGQMIRDLLNLAGFVL.... 39
3 -6.080sp|Q96QB1|RHG07_HUMAN Rho GTPase-activating protein 7 OS=Homo sapiens GN=DLC1 PE=1 SV=4  ali   24  239............................................................................................................................................................................................................................................................................................................................................................GASLTRSNRHRLRWHSFQSSHRPSLNS--VSLQINCQSVAQMLLQKYSLLKLTALLEK 295
4 -5.920sp|Q6ZMT9|DTHD1_HUMAN Death domain-containing protein 1 OS=Homo sapiens GN=DTHD1 PE=2 SV=3  ali   184....................................................................................................................................................................................................................................................................VSCYITAPSYVLQQLECRIINHMSSLIVGDNEELVSNVITIECSDKEKRVPFPIGIAIPFTARYRGNYRDIMVKVCDINLQSSYLNPNSLEGMKGGYK--TCASVKVYKLG-IFSVVS............................ 299
5 -5.710sp|Q6AHZ1|Z518A_HUMAN Zinc finger protein 518A OS=Homo sapiens GN=ZNF518A PE=1 SV=2  ali   45  277............................................................................................................................................................................................................................................................................................................................................................................LRLFPFSSKQLVKCPR---NQPVV-----VL........... 300
6 -5.710sp|A7MBM2|DISP2_HUMAN Protein dispatched homolog 2 OS=Homo sapiens GN=DISP2 PE=2 SV=2  ali   17  169..........................................................................................................................................................................................................................................................................................VTGMDLGLKQELLRHFLVQDTVYPLLALVAIFFGMALYLRSLFLTLMVLLGVLGSLLVAFFLYQVAFRMAYFPFVNLAA---LLLSSVCATLIFFDPSGGLAQRVGRTMHHFGYLLLVSGL... 298
7 -5.560sp|P98161|PKD1_HUMAN(removed signalp:1-23) Polycystin-1 OS=Homo sapiens GN=PKD1 PE=1 SV=3  ali   18  234.......................................................................................................................................................................................................................................................................................................................................LAHGLSLLLVAVAVAVSGWVG---ASFPPGVSVAWLLSSSASF----------FLGWEPL-----KVLLEALYFSLVAK 297
8 -5.550sp|Q8TDX9|PK1L1_HUMAN Polycystic kidney disease protein 1-like 1 OS=Homo sapiens GN=PKD1L1 PE=2 SV=1  ali   15  186...................................................................................................................................................................................................................................................................................................................................AVWAICGTASLACSLGTGFLAYRFGQEQC-------VQWLHLLSLSV--VCCIF-----ITQPL-----MVCLMALGFAWKRR 249
9 -5.550sp|Q96JA4|M4A14_HUMAN Membrane-spanning 4-domains subfamily A member 14 OS=Homo sapiens GN=MS4A14 PE=2 SV=2  ali   15  33................................................................................................................................................................................................................................................................................................SLLDFLKGEPRVLGATQILLALIIVGFGTIFALNYIGFSQRLPLVVLT----------------GYP------WGALIFILTGTVTDKKSKLLGQGVTGMNVISSLVAITGITFT... 128
10 -5.530sp|Q00975|CAC1B_HUMAN Voltage-dependent N-type calcium channel subunit alpha-1B OS=Homo sapiens GN=CACNA1B PE=1 SV=1  ali   12  2...............LGFVFHKGSYLRNG-VMDFVVVLTGILATAGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLEFY.......................................................................................................................................................................................................................................................................................................... 95

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 1 3 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.