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Query: PF11300.8; L0F544_DESDL/8-135; Protein of unknown function (DUF3102 topsan), from PfamA32U

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst RTPQVIATEINMIVHQTKKILLTNAIEIGRRLKEAKSLVEHGEWGKWLEESVSYSQSTACRLIRICEEYGASLPDGSGTSNLAPVPNLTYTQALLLLGLPEGEREEFIAKNDVATMTKQELQQALRDRLast
1 -7.950sp|Q9H503|BAFL_HUMAN Barrier-to-autointegration factor-like protein OS=Homo sapiens GN=BANF2 PE=1 SV=1  ali follow..  14  19KDVCWVDGISHELAINLVTKGINKAYILGQFLLMHKN---EAEFQRWLICCFGATECEAQQTSHCLKEWCA......................................................... 87
2 -7.840sp|O75531|BAF_HUMAN Barrier-to-autointegration factor OS=Homo sapiens GN=BANF1 PE=1 SV=1  ali follow..  11  18KPVGSLAGIGEVLGKKLEERGFDKAYVVGQFLVLKKD---EDLFREWLKDTCGANAKQSRDCFGCLREWCD......................................................... 86
3 -6.140sp|Q8IZH2|XRN1_HUMAN 5`-3` exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1  ali   15  176YLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVF----------------YEDDIWPGENENGAEKVQEIITWLKGH 287
4 -6.040sp|P13942|COBA2_HUMAN(removed signalp:1-27) Collagen alpha-2(XI) chain OS=Homo sapiens GN=COL11A2 PE=1 SV=4  ali   10  18GSLDSLREEIEQMRRPTGTQ--DSPARTCQDLKLCHPELPDGEY--WVDPNQGCARDAFRVFCNFTAGVTPRDDVTQFSYVDSEGSPVGVVQLTFLRLLSVSAHQDV..................... 124
5 -5.820sp|Q8IZH2|XRN1_HUMAN 5`-3` exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1  ali   15  26YLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVF----------------YEDDIWPGENENGAEKVQEIITWLKGH 137
6 -5.590sp|Q86UQ4|ABCAD_HUMAN ATP-binding cassette sub-family A member 13 OS=Homo sapiens GN=ABCA13 PE=2 SV=2  ali   14  43KSLEETWSSGNPIMTFLSNFTVTEDVKIKDLMKNITK------LTEELRSSIQISNETIHSILEANISHSKVLFSALTVALSGK----DQEILHLLLTFPKGEKSWIAAEE---SLPGSKVYSLIVL. 159
7 -5.560sp|Q8TAA3|PSA7L_HUMAN Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=1 SV=3  ali follow..  9  111.TVEYITRFIATLKQKYTQSNGRRPFGISALIVRLYQTDPSGTYHAWKANAIGRSAKTVREFLE-------KNYTEDAIASDSEAIKLAIKALLEVVQSGGKNIE-IRRNQPLKMFSAKEVELYVTE. 239
8 -5.500sp|P02452|CO1A1_HUMAN(removed signalp:1-22) Collagen alpha-1(I) chain OS=Homo sapiens GN=COL1A1 PE=1 SV=5  ali   13  1.VVRDRDLEVDTTLKSLSQQIENIRSPEGRDLKMCHSDWKSGEY--WIDPNQGCNLDAIKVFCNMETG............................................................ 74
9 -5.310sp|Q9Y334|G7C_HUMAN(removed signalp:1-28) Protein G7c OS=Homo sapiens GN=C6orf27 PE=2 SV=4  ali   16  112..LVGALRETVVAARALDHTLARQRL--GAALHALQDFYSHSN---WVE............................................................................... 153
10 -5.250sp|P25787|PSA2_HUMAN Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2  ali follow..  5  106.PTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-PSGAYFAWKATAMGKNYVNGKTFLE------KRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAA. 232
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;