current user: public
If you have questions about the server, please let us know.

Query: PF00208.21; DHE3_ORYSJ/176-408; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230
# Score Template Links and tools%idFirst GGSLGRDAATGRGVMYATEALLTEYSESISGSTFVIQGLGNVGSWAAKLIHQKGGKIVAVGDVTGAIRNKSGIDIPALLKHRSEGGSLEDFYGAEVMDAAELLVHECDVLVPCALGGVLNRENAAEVKARFIIEGANHPTDTEADEILAKKGVIVLPDIYANSGGVVVSYFEWVQNIQGFMWDEEKVNRELQKYMKNAFQNIKDMCKSQNCNLRMGAFTLGVNRVAKATLLRGLast
1 -3.440PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  8  24..................................................................IIEGDTIPREFIDLEEVIILNKIKFTSDLERRRYLILRRKTRKVWPYAKLASERLSELNARLASIKSKSERRKYTKIVQKYIEEQFAAELKKLTRTEGQILVKLIHRQTGVTTFQ---KNLRSGWRAFWYDTTAGLFDIELKSEYNPVNNREDFLIEDILQRSFQRN 189
2 -3.090PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  20  10..................AHFKRYIKEHVKGKKTGL--FITLGAVGRELLNEGGNEILAEFICQGAI...................................................................................................................................................................... 68
3 -3.060PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  9  5..............................................................................................................................................................VNINLANMLFRYLEAVKRSFAGTAGSDEIIADIEARIAELFYEKMENERQ----------VITQKEVDAVIAIMG 80
4 -2.770PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  11  95.................IQDYEQEYENQLKDILETIIGVEDV--------------VVNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIVIIKNG------DKETPVVVQTKKPDIRVLVVAQGVDNVQIKKT---VPSHRVAVAP............................................................................ 224
5 -2.730PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  10  4.GAKVSLEILNYAEFASVTELYT----DEKGCVSITIGLGDIHIRAVK--GFFAEAMGHVRT-------QEEITLILNDNLLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAK---------EILHLAKGNFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKDYKDVTASVLEDHLK..................... 193
6 -2.600PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  19  37.................................AVVDG-GGIGKHITARLRQE-VEILALG--------TNAAATVAMIKAGANEGATGERAIIYNAPRVEAITGSLAIILADAMLGELTPAMAAAIAAS....................................................................................................... 129
7 -2.490HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  7  33......................................................................................................................IDENGKSRHSVWL-----SDDVWQEVDAFYKLDNCPIRNEFAEKA---LRQYCGRLHAERTGAYLPRALQGVLEGTLGVFGERLGRLLLKLAVEHNMTNHLLG............ 127
8 -2.120PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  9  28............................................................................................................MALRRELPEGVAPAQVRGALTAVIRRTLGAPGTFDNDTGNDGAGWLRI-EVYISTGSCTTAFLPLGLPASDDFWSQPDAPWTSARV....................................... 125
9 -1.970PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;  ali follow..  9  82..................................................................................................................LYDELPHHAVQSLKHRLLIYRKERYITIQEQDYIRD---------SFVRAGFSSDLIRYDAMVYMYELQSAMVKS............................................ 157
10 -1.970PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  8  147................................EIQPIALGSTKTIKLGCILSDGSTHMISDDVRTDLFGGRQINTVNDNDPIRYKLASTNIKNYAMPKKEKTSAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENMP----GLAVSNGNGTFSYPQEKNSLFETYPGFSDWINGKVSSIFQKELVYKYCSGGIIGEDGKSHKIWDYLDL...................... 326
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.