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Query: PF00290.20; TRPA_MAIZE/94-347; Tryptophan synthase alpha chain, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMSRSLAEMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNALPLast
1 -3.540PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  11  34.REQRTRYANTCVELMRQLNPGVRDTEEHTTKLWDH----LDVDTPYPMPDIA--PYNHNKLKYKHYGKNINLLIEQAILKEDGAEKEDAIIYLGRLMKRLYSTWNKENVDDEVIVEHL....................................................................................................................................... 162
2 -2.790PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;  ali follow..  11  32...............................................................................................................RGFYCTRSIELAKEWACAGLDDGFANRYTLTTDGLTFLDLSQPPYTILNWLALLVENRRFQPTTAVAAQGIEYLRQVFLPDISQADVIVGYRADDSYFSFARTFVNNAISLDQLADAMRLGELGKQIVLISSRAFAALQ.... 170
3 -2.540PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;  ali follow..  12  83....................................GLDCYKVGPTLG--LDNGPLIIETRIITLDAGSYCNKTVVSYTNLKETMPLAVGIVLHEPDYMTYVDPTDNAGGDNGKIFVGAAFPTLVKEAKAVLFPEKEKKELRGGADGHVLAISEYEPGADFTYYWG-AAWSKADIKDSAAWNAYMADFAQKVRNPLTV........................................................ 292
4 -2.350HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  15  136.............................LTTPARTLLDCAVFPFPQALPIYDS---------ALRKSTTIEEVQSLMIQSVCDEVSVTKLLKYANPLSENGGESLMRGQI-SFGSSCWQCSS................................................................................................................................... 223
5 -2.150HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  7  1........................................VKVEVHYFDELLERIRDIRASEKRVYR--KVKEIFALSVDYDSKSQVAQSFFKSVQNKLEYAATGHTAPEL-----ADASKDNMGLTSFKGVKVRRGDVTVAKNYMTHEEISTLNLIVNMYLDYAELQAKGHIPMHM-ADWESKLGDFLRFNGREVLENFGTVKREVAEKLALEQYE--------YDTHRRALEAADDVDELTADVKRLKR... 200
6 -2.070PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  13  10.......................................................................................................................................MALVLTMCSAFSLKKGHSKTVYAFGIVYFTDIQILDSARDLYSYQLKNYVEDNGLQQNSTCMIYFSENRKKLEKEATKILSKYKRNRNTTVTRIDTDK..................... 125
7 -2.010PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  10  2.........DTIDNFLDAMFAPYPASTRLTDAKVELRAMMED----YADAIASGMTHNEAVGRVITDFGNLQEIAPVLGIADDLTAAEKA------PQPEAAPAPAGTEGVGAPSRPRVTLPEAQELAEARRRGAASLPLFAFRGLSETGLVPFNEDTATFLALAVDLPLVALGVIMLLTRSRLFTNVKHLVDLEFTPDPIVTAARLRLEHEDRRMRRLAIAVGL............................. 222
8 -1.970PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;  ali follow..  10  34...........................................................................................................................................IHLQPDQTSGQLTIYNDDDEELANVMIEEWATYDGDDFMENVKPNLKSTLCRMKKPYSFVLVDEDKETVAELLLIDDDTLLVDDELLKGLDK---------ELDEFLKNLLE... 147
9 -1.660PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  9  28............LEILSPGWWNNEEGPDFKHAEFFLEGKGVEIHVFASDWIHHKHENQKTYDAVCLHVVMWNDLKGRCVKNFSGKVIPQITLS--LYLEAELDEIIETIDVGSYIGNKQVIPGYCNLEMRKQKITQQWIGGFLDYAGDERILQKAKKYEKYEAIMESLGYKNNKKPF----------LMLASLVTAETIQSFVPEYTPAQEKKIIAQSLLLGMA---LPLNEEETKRFDDETIQYFDRIFS... 269
10 -1.560HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;  ali follow..  14  115....................PDLSSEASLA----EWGQKIIE-GIPIYNPTIA-DIFMEGYEKQKSLQSLTNRSLEQLASMRVQADR--LILDIWNQVEAK--------------FQDVSPNEKR--LEKCRDYGLIIIIGPEKNRIRRFFKICLSIHIPIFFWKSLQKIT................................................................................... 256
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.