current user: public
If you have questions about the server, please let us know.

Query: PF00389.30; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .
# Score Template Links and tools%idFirst ILVSDAMSEQGLSPLLNDPRVECVQQNVADADDLHEYDALLVRSATTVTEELMEKMSSLKIIARAGVGVDNIDIDAATKHGIVVVNAPDGNTISTAEHTFAMICSLLRKIPQANASIKAGEWKRKAFQGTELRGKTLGIIGFGRIGSQIAKRAKAFEMTPYVFDPFLTKARAEKLGVTVASLDDVLQVADIITVHTPLTKETKGLLGMKNIGKTKKGVFLINCARGGIIDEEALKHYLREGHIAGAALDVFEEEPVADEELLAFDNVIATPHIAASTKEAQLNVAEQVSQEVLHFLEGNPVSNSINLast
1 -3.230PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;  ali follow..  11  19...............................................................ETGERAFGYDIWTKYNTTEPVVEARYEGELNPDMKAKIAELG-KTDPKAAQELYRSVSYHVDHGNGLDCYGPTLGGGTTA-AGDTIVYPYCYATQEILDNGPYNPLVVKGDSTIIETRIITLDAGSYCNKTVVSYTNLKETMPLAVGIVLHEPDGAIVADAANGYM............................................................................. 194
2 -2.800HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  14  49.......................................FFKSVQNKLEYAATGHTAPELIAKRADASKDNMGLTSFKGVKVVAKNYMTHEEISTLNLIVNMYLDYAELQAKGHIPMHMADWESKLGDFLRFNGREV-LENFGTVKREVAEKLA--------YEQYDTHRRALEAADDVDELTADVKRLK.................................................................................................................... 199
3 -2.700PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  8  15....................................................................IEKKNLRTDDGLRLEILSPGWWNNEEGPDFKHAEFFLEGKGLIRGSVEIFASDWIHHKHENQKTYDAVLHVVMWNDLKGRCVKNFSGKVIPQITLSLYLEAELDEI--IETIDVGSYIGNKQVIPGYCNLEMWIGGFLDYAGDERILQKAKKYEKWIENKPFERVLYEAIME------SLGYKNNKKPFLMLASLVTAETIQSFVPEYTPAQEKKIIAQSL................. 238
4 -2.530HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  14  3..................................................................................................................................SLLLSTFAMMGL--IGFFVAGVIKLIASAADSLAFYSSHQE------ELARLKRIRKLHQKVATLITESALSDEEYGSDGREDFSRGV------TKHPGDNRGFYHGVSPGESERGLMDYFYPEDTRTMFLRKEEQMLQHDKKNNKTSSTNKK....................... 144
5 -2.190HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  9  2.................QTNYKRQRMNIFDIAKQNQEKAWQVIKNTNIIQIWEDAGAKINLVGSLRTGLRDIDFHIYSSPDMIHIREGSRYDGYFEKVAQRISEIMTDEIRETILRLKYETPETEKIIGVEYYQAVIGVRDYSGFKEWRKQH.......................................................................................................................................................... 193
6 -1.940HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  9  8.................................................SALLQQAKQERRCCYGTSDAQRRALKRRLHAGELVADRTLWNTMTREQQSLQVIRALSAIHPQW------------------FAGLSAACVGLQHNYSLHDGTV------------HIASKSGIGGGDEARLNRIYINRIPTRKHNILLTTPARTLLDCAVFPFPQALPIYDSALRKSLTTIEEVQSLMIQSVEVSVTKLLKYANPLSENGGESLMRGQISSCWQCSS............................. 223
7 -1.730PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;  ali follow..  7  65....................................................................................................................................................................KAFADNTPVLFAHGITHLYDELPHHAVQSLKHRLL----TYFGKTTYYRIYRKERYITIQ-----EQDYIRDSFVRAGFSSDLIDAMVYMYELQSAMVK........................................... 156
8 -1.710HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;  ali follow..  12  1.........................................................................................................................................................................................LEDGDFVKLSNLTIGYTLPIRNNKYMKSLRVYVSGNNLFC--ITGYSGLDPELDISNVQAPGVEYRDTYPTTRSFTFGVN......................................... 78
9 -1.680HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  13  11.................................................................................LSVIAFLAGAGVSAGVFAFVLVIGVVPRILRCSRIENIILIENVMICGVNLGFANMPKVPVSNICGNIIIAIYGLCVGIF-------------VGCIAVALAEILHTFPIIYKRMKLRAGLGIIVISMAIGKA............................................................................................ 143
10 -1.470PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF  ali follow..  25  155.....................................................RAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAP.......................................................................................................................................................................................................................... 189
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.