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Query: PF01128.19; ISPD_ECOLI/8-229; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRLast
1 -4.050PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  6  1...........................................LEKIISISGRPGLFEVHTQTRTGVVATSLVDGKRINANARNQVSLLSEINIYGLEKEVP-------LQEVLTMIHTKEEGKQCSVKPKSPADELEAYFFDVFQDYDEERVYPSDIKKIIQYNILAEKVPQVFKAETAEEESQEEVA................................. 140
2 -3.650PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  6  16................................................................................VAMINLTSCEIEIDDFYDDDNIGGSYYNKSLDLCSRPWADTFYDADGNYCYQELNFYLDRHGEDYIRVEYPNGRYSESVYSFTWNWEDRSQYSLRMV--YGPGDVSYLDDVWIRGNVLSGYLDGHDNYVDFT.......... 145
3 -3.230HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  11  1...........................................................................................................................................................LQTNYKRQRMNIFDIAKQNQEKAWQVIKNTNIIQIWGAKINLVGSLRTGLLMKHRDDFHI....... 64
4 -3.080PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)  ali follow..  11  11..VMVIDVAYLNFVINDLRKYFEPLLGRSLQTVDLALFTMYLAMDDVQVLLVYDKQSGKLEHCLPSDLKNELDGVAFKASLGEFSFMAAPSEGFVLYLDLLQIVLNAAEVKKLIVVPFNEEYGK----EVENVLRECALENAGHKEEAKDIVYFRMEEPAACRWEMLGYPLMSVL............................................... 194
5 -3.040PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  14  12............................................................................HHKILVMQGCFRIGLYKQGLLHDMSK--YSPTEFLVGCRYYKGYMSPN--AERADRGYSSADYAVSKPGDDKTHTKMEGMKMPIRYVCEMFIDRVSASKNYQKEKYTDKSALEYYEKS--------VDHYMIHPDTKAMLEYLLVM 162
6 -2.710PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  7  8...............................................................HSKYVIRIICEGEKTEPLFFTSLCDVKTIPQPDIPEEKPSMADRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNEGVDE--AWAVFDKDEHPADAFEEAEKLIDDKKVNIAFSSRSFE................................. 146
7 -2.530PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  11  62LLMVIP-------MDAETPGGRLLRPQAQVMEEAIRH-------WATVLSVRLDLDA------ARGKLGPEACEMERQRFDGVIAMMERNDGPTLVVTDSGRPLVPITTFS-IAMAYQQNGGRLDPFVEGLEALETLQDGDRVLISTSACNDIGMVQIPNKLEAALGGKKLQIEHAFGREFPE-GCMIDAQKMQQRMKDLHEAGVPVTN............. 287
8 -2.140PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  9  20...........................................................................PDLKTAMLGRIRADEPRKVWTPSDFVD-LASRDAVDKTLQRLTK-----------AEALRRIDRGLYDQPGFNKLTQKPNPPDPRSVIDAVGRRDQTRMLVDGMTAANDLGLTDAVPAKIVVHTDARRRAIKLGNATITFRPT.... 150
9 -2.070HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  6  1............................................................................................................................MTPYKVSHQLKKLNNSSSLTKKNMTMEENTVHPARKLLLGQLI....................................................... 43
10 -2.030PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  15  81...........................................................................NEYNALLNGDAADAAAVKAEQVKDSK----TVESLGKELKASAPEYEGC-QADWYETHEKSLSKAVRAVVESKAAKRLDDAKTN-----AKLDEASKLLADSDGKVADNA..................................... 199
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.