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Query: PF01262.21; Q9S227_STRCO/141-353; Alanine dehydrogenase/PNT, C-terminal domain, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst APQVGAYHLMAANGGRGVLPGGVPGVLAGRAVVIGGGVSGWNAAQIAIGLGFHVTLLDKDITKLREADKIFGTKIQTVVSNAFELEKACLEADLVIGAVLIPGAKAPKLVTNELVSRMKPGSVLVDIAIDQGGCFEDSHPTTHAEPTFPVHNSVFYCVANMPGAVPNTSTYALTNATLPYIVELADRGWAEALRRDPALAKGLNTHDGKVVYRLast
1 -5.790PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  11  1.....................................................................................................................MKKVLVALTMVMGMGSAVAFAQEPVKLPAMEQNQQTSQITVKELPQVVKSTLSKDYEGTIVKEAFVAEKENGKIKEDQSTEEITVLLNEKGEPVNE 109
2 -4.120PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  1.........................MKRIVSMMVIFTLLLGGMTHVQAQTSKAAXXXXXXXXXXXXXXXRLAKDAVMGEEAFNNAMQAITNRSFVLEAVQPLNGRVYYVNSNTNFVSLNDGQAMVQIGPNGLGGITVQGSASNVQVKQENNGNVYLSMS--------------IFISATVNLVLYSGTNNAMVTVDPNFSGNNLTMNGTLL.. 184
3 -3.690HGC00672 gi|162843654|dbj|BABA01001055.1|4.0 TMP00845;  ali follow..  10  4........................RLNTNKQFMVGNGILAFAVIFVV----VIFVYMSMRLQQQKAENRNFIETYTITLTKGFA-----DSTSIFINDSLLVNRTMTEEPFILEVKRFAEQSMIVNNATEKLSLFELSEQGGEYRFEKEGEEVKPTGAG---KKLSKECCQTLSTFILFFLTSI............................. 155
4 -3.300HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  14.............................................................................................GAAFMVGCGKQVPENIIQPDRMENILYDYHLSISMGNNLSYSDNYQKEAYKNYVFEKHHI---------TEAEFDSSMVWYTRHTEELASLYKKLGERFRSEKKHMQE............ 112
5 -3.050PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  1......................................................MTLIKGEPGKGIVLKEYGKNIQKIVDWILTIEDREQRTRYANTCVELMRQLNPGVTEEHTTKLWDHLFIMSNFKLDVDTPYPMPDIAVLGRKPYKHYG-INLLIEQAILKEDGAEKEDAIIYLGRLMKRLYSTWNKENVDDEVIVEHLSELSKNNL... 170
6 -2.280PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;  ali follow..  9............WHGSSHVIKHPEYGMGKPNNDYGRG---ELAKEWACAGLDDGFANRYTLTTDRRFQPTTAVAAQGIEYLRQVFLPDISQADVIVGYRFARTFVNNAISLDQLADAMRLGELGKQIVLISSRAFAA---------------LQFQDCEIARASTYHVLRNERDVTAREAYRRKSAEADIDGLFMRDIIREKVTNDDPR.... 225
7 -2.180PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  121.....................................................................................APYFDGAKLLIAADCTA------YAYASFHEKFIKGHVTL-IGC-----------PKLDSVDYSEKLTEIIRRNDIQSVTIVRMEVPCCGGLEMAAKKALQDSGKFI------WQVATISIDGRIL.. 223
8 -1.940PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  11  57.................................................................................ESVLMQHIEKVEEAQVEVEKVHKRLDIINNRMSFCIQKVGMVRYNAFADMGSDLSYSYALLDEN----NNGMI------ITGIYGRSETVTYAKPVKD-----GKSNYSLSVEELQALQRAK.......... 163
9 -1.860PB053138 Q73Q90_TREDE/1-298 PB053138; Pfam-B_53138;  ali follow..  138......................................................................................DYKERAEMLYVEALVNIYPSCKAVVFETSKKMLTREDILNCTLPKE-NIRFFNIQGTNDMLVDSLGMSTLFLPDVQYHFHDLNPNDVVNHAYNVLSYI--------------YDNDNPIEDGNTI.. 257
10 -1.820PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  12....FKRYIKEHVKGKKTGLFITLGLNEGGNEILAEGAIDPKVIEEMKEMAAKMGDKAIHLITPERQATWKQASTHPDENDLKNARKAFEG.......................................................................................................................... 120

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.