Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF01402.21; Q8ZX60_PYRAE/47-86; Ribbon-helix-helix protein, copG family, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40
# Score Template Links and tools%idFirst LISVHVPKKMLEELDELVRRGIFPNRSEAIRAALRDLLYKLast
1 -7.420HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  27  41.HSVWLSDDVWQEVDAFYKLDNCPIRNEFAEKALRQYC.. 77
2 -6.030HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574;  ali follow..  15  58.KTLSIPGWLNDAAESA------INFSSVLQKGLKSELG. 90
3 -1.150PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  11  2.SYISVPRDLTKVKSKVM...................... 18
4 -0.707HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024;  ali follow..  7  95......EKKIESAIRIVGNENPYHPIRDYLNGL....... 121
5 -0.693PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  17  24.AKVELRAMMEDAYADAIASG--MTHNEAVGRVITDF... 57
6 -0.562PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  16  1.MNEGIPEQLIRRLSDASR..................... 18
7 -0.560PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]  ali follow..  13  157.....VHPELKHLIETKII-----HESKGTKARGKHILNL 186
8 -0.557PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  10  77.LKITIDENLFPLLSIKSNNG................... 96
9 -0.488PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;  ali follow..  15  121..QIQMPISIKEQALFIVSEHRIQHRHD............ 146
10 -0.388HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  22  27...FKVPEGYFENLTSEVMGKLPEKEGPAF.......... 53
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.