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Query: PF01810.18; RHTC_ECOLI/13-206; LysE type translocator, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst IVALMSPGPDFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGIALLGLHLIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKEAVSAPAPQVELAKSGRSFLKGLLTNLANPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVETLAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISRLast
1 -4.450PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  14  42AGLILSLLGPAYLVFFADLQITAGMVWVAFLAVA------AIFGVLWFVEPLTYFPIL------SAAMYQAFM-------------------------------IGNISNKLVPAAIVAQSSIGAKAGSKRGDLAAVMAIGGAATMHLLSLLIFVGFLGTWLVSLVPVEVIEVARLYIMPSLMGAVLVQAIVSM 193
2 -3.480PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  9  7.....GPEAHFKRYIKEHVK-GKKTGLFITLGADPAG--HGESMLKVGRELLNEGGN-----EILAE--FICQGAIDPKVIEEMKEMAAKMGDKAIHLITPERQATWKQASTHPDE.............................................................................. 108
3 -3.280PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  15  5.............AIDATIFASSHPDIAKRTSIS-GLLISCVMLLIGILSFLEDKSSTVSMALMVFGTGLFLLGIFRL.................................................................................................................... 73
4 -3.260PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  6  126AILVSTG---IPLFAFRGLSETGLVPFNEDTATFLALAVDLPLVALGVIMLLTRSRLF-------------HLVDLEFTPDPIVTAWAARLRLEHEDRRMRRLAIAVGLWICAALPLAVVQAL....................................................................... 236
5 -3.200PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  6  12VIRIICEGPLFFTSLCDKLLDENGGEEEWDVKTIPQPDIPEEKPSMADRGLYKNKKKRVKGKK-VDEAWAVF-----------DKDEHPARKDAFEEAEKLIDDKKVNIAFSSRSFEYYLLLHFEYLYHPFHATECGERI...................................................... 169
6 -3.060PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;  ali follow..  8  5..........................................................FVIVRSENAEYLCHNVNGTYVDVSDPSTEFVSGEDDFRLVDPDSSLTRKEYEFRGERFYL............................................................................ 64
7 -2.920PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  9  1..ASYISVPRDLTKVKSKVMFNKRQLICFGMAVLIGVPSFFLMTAVMGMMVIMMPFFFLAMYEKNGQPLEVIL......................................................................................................................... 80
8 -2.810PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)  ali follow..  10  11.VLEYCPAPGQF--TNKLPEINNTMSAEERLKACEEQLEDGNLVCLG-GYITVALD---PIKNGKGSDIRIL---NAFYSANDPKYGDATIGGSVEPGIVYVGVGS........................................................................................ 111
9 -2.600PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  8  11..........SALFMLTSCSMFEIDNYEEPSETIWGEVVLTDQGSEGIRVRLTELSW-FQNTKIFKGEYNVRIDGPFIPLVRENTDGTLLHDGSVNTEISGTTKVKF----VQPFLNV............................................................................ 139
10 -2.520PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  7  3MSVTFPPGRPLSNFLLEGTIMKLTVYFDGTFWFALVEHVNRKGQYKVFRYPFGKEPKDSDIWNFIAKKLPSLIKKYDHIKTSSHADSIPQPKKMNPKRMQRVLNKSKKQSAVSTKA.............................................................................. 118
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;