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Query: PF02254.18; Q92CZ9_LISMO/5-120; TrkA-N domain, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst FAVIGLGRFGGSICRSLVEQGMEVLAIDSDEERVNEYMSIATHAVIANSTDENALRQLGIRNFEHVIVAIGEDIQSSILTTLILKEMGVKYVTAKATNDKHAKLLDKIGADRVVHPLast
1 -4.420PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]  ali follow..  10  73.........GKQTIKQLNAQGVQLSNIKITDENIKSFDRVIDYSLKKEVGADPPKYLVFFKAKDVDVM................................................ 136
2 -3.790PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)  ali follow..  18  50..LVCLGAAGGYITVALDQKGSDIRILGNA----------------YSANDPKYGDATIGGSVEPGIVYVGVGSSP........................................ 113
3 -3.450PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  13  113..IIGVEDV--SIVVNVDATSLKIFEKNTQETSTNETDKQGGKRTVSEMSSDEVIIKNGDKETPVVVQTKKPDIRGVLVVAQGVDNVQIKKTIIEAVTR-----VLDVPSHRV... 220
4 -3.290PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  17  44......GGIGKHITARLRQELPPEVEI---------------LALGTNAAATVAMIKAGANEGATGERAIIYNAPRVEAITGSLAIILADAMLGEL-TPAMAAAIAASPARKFLLP 137
5 -2.460PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)  ali follow..  20  6......GELLDEAVDFCRKRGLEFYAVNSNPEEEADMSALRSRKVSADMIDDRNL............................................................. 56
6 -2.130PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  7  9LEILNYAEFASVTELYTDEKGCVSITIGLGDIHIRAVKDGFFAEAMGHVRTQEEIT............................................................ 64
7 -2.030PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  7  1......................................................MTVLSLKEVKLLMNDTQKN--DLFYVCCLIE------FIGRKTKNRRSIIVQKLGKKEL... 51
8 -1.920PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  11  5..VCSWGRFG------LLLFACPIIFASIMKKIFSGCIFGSVLPAWSQEIVAGELERCFLAMPESVLPIVTMEERNDLCTVTFLLNRNFIRIQTSTVGEVFMRILPFSDSSSVI.. 149
9 -1.910HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  11  21LLLIGKRKDEDDMAKSTKTYEERIRALEKKEEATKKLIAQRKELEKRKKAEESKKRTHRLCQIGGAVESV-EEEDLPKLIGFLKRQETNGKFFSKAMQKELVTDMEEV........ 136
10 -1.760PB012108 A3U600_9FLAO/1-189 PB012108; Pfam-B_12108;  ali follow..  11  9YNSITKRFLSGNIENSIFVNQQNAMAKKEKKQLKKRLLHKYRMVILNEDTFEERV-SLKLTRLNVFILVTLTSLLLIAGTTVLIAFTPLKEYIPGYSSTSLKLKATEL........ 115
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.